3N7C | pdb_00003n7c

Crystal structure of the RAN binding domain from the nuclear pore complex component NUP2 from Ashbya gossypii

PDB DOI: https://doi.org/10.2210/pdb3N7C/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Eremothecium gossypii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-05-26 Released: 2010-06-16
Deposition Author(s): Sampathkumar, P., Manglicmot, D., Gilmore, J., Bain, K., Gheyi, T., Atwell, S., Thompson, D.A., Emtage, J.S., Wasserman, S., Sauder, J.M., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.26 Å
R-Value Free:
0.293 (Depositor), 0.298 (DCC)
R-Value Work:
0.234 (Depositor), 0.239 (DCC)
R-Value Observed:
0.236 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3N7C

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of the RAN binding domain from the nuclear pore complex component NUP2 from Ashbya gossypii

Sampathkumar, P.

To be published.

Macromolecule Content

Total Structure Weight: 29.64 kDa
Atom Count: 1,625
Modeled Residue Count: 211
Deposited Residue Count: 260
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ABR034Wp	A, B	130	Eremothecium gossypii	Mutation(s): 0 Gene Names: ABR034W, AGOS_ABR034W, NUP2
UniProt
Find proteins for Q75DJ0 (Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)) Explore Q75DJ0 Go to UniProtKB: Q75DJ0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q75DJ0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.26 Å
R-Value Free: 0.293 (Depositor), 0.298 (DCC)
R-Value Work: 0.234 (Depositor), 0.239 (DCC)
R-Value Observed: 0.236 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 57.54	α = 90
b = 62.55	β = 90
c = 76.25	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
SCALA	data scaling
SHELX	phasing
SHELXD	phasing
SHELXE	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-06-16

Deposition Author(s):

Sampathkumar, P.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2010-06-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-08
Changes: Refinement description
Version 1.3: 2018-11-21
Changes: Data collection, Structure summary
Version 1.4: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
Version 1.5: 2024-10-16
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.