3MYA | pdb_00003mya

Crystal Structure of HP67 H41F - P61

• PDB DOI: https://doi.org/10.2210/pdb3MYA/pdb

• Classification: STRUCTURAL PROTEIN
• Organism(s): Gallus gallus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2010-05-10 Released: 2011-06-29 
• Deposition Author(s): Brown, J.W., Farelli, J.D., McKnight, C.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.277 (Depositor), 0.261 (DCC) 
• R-Value Work: 
  0.215 (Depositor), 0.214 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Starting Model: experimental

Literature

On unsatisfied hydrogen bonds in the N-terminal subdomain of villin headpiece.

Brown, J.W., Farelli, J.D., McKnight, C.J.

(2011) J Mol Biology 413: 543-547

• PubMed: 21903098 
• DOI: https://doi.org/10.1016/j.jmb.2011.08.024
• Primary Citation Related Structures: 
  3MYA, 3MYC


• PubMed Abstract: 
  

  Villin headpiece is a small autonomously folding protein that has emerged as a model system for understanding the fundamental tenets governing protein folding. In this communication, we employ NMR and X-ray crystallography to characterize a point mutant, H41F, which retains actin-binding activity, is more thermostable but, interestingly, does not exhibit the partially folded intermediate observed of either wild-type or other similar point mutants.

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Organizational Affiliation: 
• Department of Physiology and Biophysics, Boston University School of Medicine, Boston, MA 02118, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 15.24 kDa 
• Atom Count: 1,081 
• Modeled Residue Count: 131 
• Deposited Residue Count: 134 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Villin-1	A, B	67	Gallus gallus	Mutation(s): 1  Gene Names: VIL, VIL1
UniProt
Find proteins for P02640 (Gallus gallus) Explore P02640  Go to UniProtKB:  P02640

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.277 (Depositor), 0.261 (DCC) 
• R-Value Work:  0.215 (Depositor), 0.214 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.409	α = 90
b = 65.409	β = 90
c = 68.283	γ = 120

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHENIX	model building
PHENIX	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-06-29 
Deposition Author(s): Brown, J.W., Farelli, J.D., McKnight, C.J.

Revision History  

• Version 1.0: 2011-06-29
  Type: Initial release
  
• Version 1.1: 2023-09-06
  Changes: Data collection, Database references, Refinement description