3MXJ | pdb_00003mxj

Crystal Structure of the mTREX1 Apoprotein

PDB DOI: https://doi.org/10.2210/pdb3MXJ/pdb

Classification: HYDROLASE
Organism(s): Mus musculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-05-07 Released: 2011-05-18
Deposition Author(s): Bailey, S.L., Hollis, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free:
0.237 (Depositor), 0.232 (DCC)
R-Value Work:
0.204 (Depositor), 0.200 (DCC)
R-Value Observed:
0.205 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3MXJ

This is version 1.2 of the entry. See complete history.

Literature

X-ray Crystal Structures of TREX1 3' Exonuclease Autoimmune Disease Mutants

Bailey, S.L., Harvey, S., Perrino, F.W., Hollis, T.

To be published.

Macromolecule Content

Total Structure Weight: 52.65 kDa
Atom Count: 3,556
Modeled Residue Count: 429
Deposited Residue Count: 484
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Three prime repair exonuclease 1	A [auth B], B [auth A]	242	Mus musculus	Mutation(s): 0 Gene Names: Trex1 EC: 3.1.11.2
UniProt & NIH Common Fund Data Resources
Find proteins for Q91XB0 (Mus musculus) Explore Q91XB0 Go to UniProtKB: Q91XB0
IMPC: MGI:1328317
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q91XB0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.237 (Depositor), 0.232 (DCC)
R-Value Work: 0.204 (Depositor), 0.200 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.16	α = 90
b = 85.72	β = 90
c = 100.27	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
PHASER	phasing
PHENIX	refinement
d*TREK	data reduction
d*TREK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-05-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-02-21
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.