3MWC | pdb_00003mwc

Crystal structure of probable o-succinylbenzoic acid synthetase from kosmotoga olearia

• PDB DOI: https://doi.org/10.2210/pdb3MWC/pdb

• Classification: LIGASE
• Organism(s): Kosmotoga olearia TBF 19.5.1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-05-05 Released: 2010-05-19 
• Deposition Author(s): Patskovsky, Y., Toro, R., Dickey, M., Sauder, J.M., Gerlt, J., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.262 (Depositor), 0.263 (DCC) 
• R-Value Work: 
  0.209 (Depositor), 0.209 (DCC) 
• R-Value Observed: 
  0.210 (Depositor) 

Literature

Crystal Structure of O-Succinylbenzoic Acid Synthetase from Kosmotoga Olearia

Patskovsky, Y., Toro, R., Dickey, M., Sauder, J.M., Gerlt, J., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 45.29 kDa 
• Atom Count: 3,314 
• Modeled Residue Count: 388 
• Deposited Residue Count: 400 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mandelate racemase/muconate lactonizing protein	A	400	Kosmotoga olearia TBF 19.5.1	Mutation(s): 0  Gene Names: Kole_0682 EC: 4.2.1.113
UniProt
Find proteins for C5CFI0 (Kosmotoga olearia (strain ATCC BAA-1733 / DSM 21960 / TBF 19.5.1)) Explore C5CFI0  Go to UniProtKB:  C5CFI0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.262 (Depositor), 0.263 (DCC) 
• R-Value Work:  0.209 (Depositor), 0.209 (DCC) 
• R-Value Observed: 0.210 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 138.171	α = 90
b = 53.233	β = 113.4
c = 59.386	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
RESOLVE	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-05-19 
Deposition Author(s): Patskovsky, Y., Toro, R., Dickey, M., Sauder, J.M., Gerlt, J., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2010-05-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.3: 2021-02-10
  Changes: Database references, Derived calculations, Structure summary
• Version 1.4: 2024-02-21
  Changes: Data collection, Database references