3MUK

Crystal structure of Brd4 bromodomain 1 with propionylated histone H3-K(prop)23


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Interaction of propionylated and butyrylated histone H3 lysine marks with Brd4 bromodomains

Vollmuth, F.Geyer, M.

(2010) Angew.Chem.Int.Ed.Engl. 49: 6768-6772


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 4
A
131Mus musculusMutation(s): 0 
Gene Names: Brd4 (Mcap)
Find proteins for Q9ESU6 (Mus musculus)
Go to UniProtKB:  Q9ESU6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
peptide of Histone H3.3
D
8Homo sapiensMutation(s): 0 
Gene Names: H3F3A, H3F3B (H3.3A, H3F3, H3.3B)
Find proteins for P84243 (Homo sapiens)
Go to Gene View: H3F3A H3F3B
Go to UniProtKB:  P84243
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
PRK
Query on PRK
D
L-peptide linkingC9 H18 N2 O3LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.172 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 35.213α = 90.00
b = 47.008β = 90.00
c = 78.101γ = 90.00
Software Package:
Software NamePurpose
REFMACphasing
ADSCdata collection
XDSdata reduction
REFMACrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance