3MSX

Crystal structure of RhoA.GDP.MgF3 in complex with GAP domain of ArhGAP20


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Mechanism of molecular specificity of RhoGAP domains towards small GTPases of RhoA family.

Utepbergenov, D.Cooper, D.R.Derewenda, U.Somlyo, A.V.Derewenda, Z.S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Transforming protein RhoA
A
180Homo sapiensMutation(s): 1 
Gene Names: RHOA (ARH12, ARHA, RHO12)
Find proteins for P61586 (Homo sapiens)
Go to Gene View: RHOA
Go to UniProtKB:  P61586
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Rho GTPase-activating protein 20
B
201Homo sapiensMutation(s): 0 
Gene Names: ARHGAP20 (KIAA1391)
Find proteins for Q9P2F6 (Homo sapiens)
Go to Gene View: ARHGAP20
Go to UniProtKB:  Q9P2F6
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MGF
Query on MGF

Download SDF File 
Download CCD File 
A
TRIFLUOROMAGNESATE
F3 Mg
GJOMWUHGUQLOAC-UHFFFAOYSA-K
 Ligand Interaction
GDP
Query on GDP

Download SDF File 
Download CCD File 
A
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.195 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 69.057α = 90.00
b = 88.977β = 90.00
c = 137.725γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
AMoREphasing
SERGUIdata collection
DENZOdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2011-03-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description