3MJP

Crystal structure determination of Japanese quail (Coturnix coturnix japonica) hemoglobin at 2.76 Angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.265 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure determination of Japanese quail (Coturnix coturnix japonica) hemoglobin at 2.76 Angstrom resolution

Thenmozhi, M.Sathya Moorthy, P.Balasubramanian, M.Ponnuswamy, M.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemoglobin subunit alpha-A
A, C
141Coturnix japonicaMutation(s): 0 
Gene Names: HBAA
Find proteins for P24589 (Coturnix japonica)
Go to UniProtKB:  P24589
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemoglobin subunit beta
B, D
146Coturnix japonicaMutation(s): 0 
Gene Names: HBB
Find proteins for P30893 (Coturnix japonica)
Go to Gene View: HBB
Go to UniProtKB:  P30893
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
OXY
Query on OXY

Download SDF File 
Download CCD File 
A, B, C
OXYGEN MOLECULE
O2
MYMOFIZGZYHOMD-UHFFFAOYSA-N
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A, B, C, D
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.265 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 62.090α = 90.00
b = 97.434β = 123.10
c = 61.705γ = 90.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
MAR345dtbdata collection
PHASERphasing
REFMACrefinement
AUTOMARdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-08
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2018-06-20
    Type: Data collection, Database references, Structure summary