3MHP | pdb_00003mhp

FNR-recruitment to the thylakoid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 
    0.206 (Depositor), 0.184 (DCC) 
  • R-Value Work: 
    0.181 (Depositor), 0.182 (DCC) 
  • R-Value Observed: 
    0.181 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history

Literature

Ferredoxin:NADPH oxidoreductase is recruited to thylakoids by binding to a polyproline type II helix in a pH-dependent manner.

Alte, F.Stengel, A.Benz, J.P.Petersen, E.Soll, J.Groll, M.Bolter, B.

(2010) Proc Natl Acad Sci U S A 107: 19260-19265

  • DOI: https://doi.org/10.1073/pnas.1009124107
  • Primary Citation Related Structures: 
    3MHP

  • PubMed Abstract: 

    Ferredoxin:NADPH oxidoreductase (FNR) is a key enzyme of photosynthetic electron transport required for generation of reduction equivalents. Recently, two proteins were found to be involved in membrane-anchoring of FNR by specific interaction via a conserved Ser/Pro-rich motif: Tic62 and Trol. Our crystallographic study reveals that the FNR-binding motif, which forms a polyproline type II helix, induces self-assembly of two FNR monomers into a back-to-back dimer. Because binding occurs opposite to the FNR active sites, its activity is not affected by the interaction. Surface plasmon resonance analyses disclose a high affinity of FNR to the binding motif, which is strongly increased under acidic conditions. The pH of the chloroplast stroma changes dependent on the light conditions from neutral to slightly acidic in complete darkness or to alkaline at saturating light conditions. Recruiting of FNR to the thylakoids could therefore represent a regulatory mechanism to adapt FNR availability/activity to photosynthetic electron flow.


  • Organizational Affiliation
    • Munich Center for Integrated Protein Science, Ludwig-Maximilians-Universität, 81377 Munich, Germany.

Macromolecule Content 

  • Total Structure Weight: 71.55 kDa 
  • Atom Count: 5,480 
  • Modeled Residue Count: 611 
  • Deposited Residue Count: 618 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Ferredoxin--NADP reductase, leaf isozyme, chloroplastic
A, B
296Lathyrus oleraceusMutation(s): 0 
Gene Names: PETH
EC: 1.18.1.2
UniProt
Find proteins for P10933 (Pisum sativum)
Explore P10933 
Go to UniProtKB:  P10933
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP10933
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TIC62_peptide26N/AMutation(s): 0 
UniProt
Find proteins for Q8SKU2 (Pisum sativum)
Explore Q8SKU2 
Go to UniProtKB:  Q8SKU2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8SKU2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free:  0.206 (Depositor), 0.184 (DCC) 
  • R-Value Work:  0.181 (Depositor), 0.182 (DCC) 
  • R-Value Observed: 0.181 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.463α = 106.56
b = 48.824β = 97.01
c = 71.349γ = 91.77
Software Package:
Software NamePurpose
PROTEUM PLUSdata collection
PHASERphasing
CNSrefinement
PROTEUM PLUSdata reduction
PROTEUM PLUSdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-10-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description