3M92

The structure of yciN, an unchracterized protein from Shigella flexneri.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The structure of yciN, an unchracterized protein from Shigella flexneri.

Cuff, M.E.Xu, X.Cui, H.Chin, S.Savchenko, A.Edwards, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein yciN
A, B
107Shigella flexneriMutation(s): 0 
Gene Names: yciN
Find proteins for P0AB64 (Shigella flexneri)
Go to UniProtKB:  P0AB64
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.198 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 56.350α = 90.00
b = 56.350β = 90.00
c = 132.260γ = 120.00
Software Package:
Software NamePurpose
MLPHAREphasing
SOLVEphasing
REFMACrefinement
ARP/wARPmodel building
SHELXDphasing
HKL-3000phasing
RESOLVEphasing
CCP4phasing
Omodel building
DENZOdata reduction
DMphasing
PDB_EXTRACTdata extraction
HKL-3000data reduction
HKL-3000data scaling
SHELXEmodel building
Cootmodel building
SCALEPACKdata scaling
SBC-Collectdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description