3M3P | pdb_00003m3p

Crystal structure of glutamine amido transferase from Methylobacillus Flagellatus

PDB DOI: https://doi.org/10.2210/pdb3M3P/pdb
Entry: 3M3P supersedes: 3L83

Classification: TRANSFERASE
Organism(s): Methylobacillus flagellatus KT
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-03-09 Released: 2010-03-23
Deposition Author(s): Fedorov, A.A., Domagalski, M., Fedorov, E.V., Burley, S.K., Minor, W., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.155 (Depositor)
R-Value Work:
0.124 (Depositor)
R-Value Observed:
0.125 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3M3P

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of glutamine amido transferase from Methylobacillus Flagellatus

Fedorov, A.A., Domagalski, M., Fedorov, E.V., Toro, R., Sauder, J.M., Burley, S.K., Minor, W., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 28.63 kDa
Atom Count: 2,499
Modeled Residue Count: 249
Deposited Residue Count: 250
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutamine amido transferase	A	250	Methylobacillus flagellatus KT	Mutation(s): 0 Gene Names: Mfla_0438
UniProt
Find proteins for Q1H479 (Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT)) Explore Q1H479 Go to UniProtKB: Q1H479
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q1H479
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.155 (Depositor)
R-Value Work: 0.124 (Depositor)
R-Value Observed: 0.125 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 33.648	α = 65.85
b = 42.72	β = 77.41
c = 50.448	γ = 69.82

Software Package:

Software Name	Purpose
ADSC	data collection
PHENIX	model building
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-23

Deposition Author(s):

New York SGX Research Center for Structural Genomics (NYSGXRC)

This entry supersedes: 3L83

Revision History (Full details and data files)

Version 1.0: 2010-03-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2021-02-10
Changes: Database references, Derived calculations, Structure summary
Version 1.3: 2022-04-13
Changes: Database references, Structure summary
Version 1.4: 2024-11-20
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.