3LX3

Plasmodium vivax 6-pyruvoyltetrahydropterin synthase (PTPS) in complex with xanthopterin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural analysis of the dual-functional 6-pyruvoyltetrahydropterin synthase from Malaria parasites.

Larson, E.T.Bosch, J.Kim, J.E.Mueller, N.Verlinde, C.L.M.J.Van Voorhis, W.C.Buckner, F.S.Fan, E.Hol, W.G.J.Merritt, E.A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
6-pyruvoyl tetrahydrobiopterin synthase
A
180Plasmodium vivax (strain Salvador I)Mutation(s): 0 
Find proteins for A5K2B2 (Plasmodium vivax (strain Salvador I))
Go to UniProtKB:  A5K2B2
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
XTN
Query on XTN

Download SDF File 
Download CCD File 
A
2-amino-1,5-dihydropteridine-4,6-dione
Xanthopterin
C6 H5 N5 O2
VURKRJGMSKJIQX-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.167 
  • R-Value Work: 0.149 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 131.358α = 90.00
b = 131.358β = 90.00
c = 73.577γ = 120.00
Software Package:
Software NamePurpose
SCALEPACKdata scaling
DENZOdata reduction
HKL-2000data scaling
MOLREPphasing
HKL-2000data reduction
Blu-Icedata collection
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-03-09
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-08
    Type: Refinement description