3LUP

Crystal structure of fatty acid binding DegV family protein SAG1342 from Streptococcus agalactiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Crystal structure of fatty acid binding DegV family protein SAG1342 from Streptococcus agalactiae

Chang, C.Wu, R.Clancy, S.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DegV family protein
A
285Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)Mutation(s): 0 
Gene Names: SAG1342
Find proteins for D4AEP8 (Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R))
Go to UniProtKB:  D4AEP8
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ELA
Query on ELA

Download SDF File 
Download CCD File 
A
9-OCTADECENOIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-MDZDMXLPSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 39.321α = 90.00
b = 84.205β = 90.00
c = 87.541γ = 90.00
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000data scaling
HKL-2000data reduction
RESOLVEphasing
REFMACrefinement
SHELXEmodel building
SHELXDphasing
HKL-3000phasing
Cootmodel building
CNSrefinement
RESOLVEmodel building
ARP/wARPmodel building
DMphasing
MLPHAREphasing
DMmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-03-02
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance
  • Version 1.2: 2012-02-22
    Type: Structure summary
  • Version 1.3: 2017-11-08
    Type: Refinement description