3LOC

Crystal structure of putative transcriptional regulator ycdc


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Crystal Structure of Hypothetical Transcriptional Regulator Ycdc from Escherichia Coli

Patskovsky, Y.V.Mennella, V.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
HTH-type transcriptional regulator rutRA, B, C, D212Escherichia coli K-12Mutation(s): 0 
Gene Names: b1013JW0998rutRycdC
UniProt
Find proteins for P0ACU2 (Escherichia coli (strain K12))
Explore P0ACU2 
Go to UniProtKB:  P0ACU2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0ACU2
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.197 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.02α = 90
b = 139.61β = 90
c = 156γ = 90
Software Package:
Software NamePurpose
SBC-Collectdata collection
SOLVEphasing
RESOLVEmodel building
HKL-3000phasing
REFMACrefinement
Cootmodel building
DENZOdata reduction
SCALEPACKdata scaling
RESOLVEphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-03-16
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description
  • Version 1.3: 2021-02-10
    Changes: Derived calculations, Structure summary
  • Version 1.4: 2022-04-13
    Changes: Database references, Structure summary