The Crystal Structure of beta-hexosaminidase B in complex with Pyrimethamine
Bateman, K.S., Cherney, M.M., Withers, S.G., Mahuran, D.J., Tropak, M., James, M.N.G.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-hexosaminidase subunit beta | A, B | 556 | Homo sapiens | Mutation(s): 0  Gene Names: HEXB, HCC7 EC: 3.2.1.52 | ![]() |
Find proteins for P07686 (Homo sapiens) Explore P07686  Go to UniProtKB:  P07686 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P07686 GTEx:  ENSG00000049860 | |||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 3 | | N-Glycosylation | Oligosaccharides Interaction |
Entity ID: 3 | |||||
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Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D | 2 | | N-Glycosylation | Oligosaccharides Interaction |
Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CP6 Query on CP6 | A, B | 5-(4-CHLORO-PHENYL)-6-ETHYL-PYRIMIDINE-2,4-DIAMINE C12 H13 Cl N4 WKSAUQYGYAYLPV-UHFFFAOYSA-N | Ligand Interaction | ||
NDG Query on NDG | A, B | 2-acetamido-2-deoxy-alpha-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-PVFLNQBWSA-N | Ligand Interaction | ||
NAG Query on NAG | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
SO4 Query on SO4 | B | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 113.898 | α = 90 |
b = 113.898 | β = 90 |
c = 397.427 | γ = 120 |
Software Name | Purpose |
---|---|
Blu-Ice | data collection |
CCP4 | model building |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
CCP4 | phasing |