3LHF | pdb_00003lhf

The Crystal Structure of a Serine Recombinase from Sulfolobus solfataricus to 2.3A

PDB DOI: https://doi.org/10.2210/pdb3LHF/pdb

Classification: RECOMBINATION
Organism(s): Saccharolobus solfataricus P2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2010-01-22 Released: 2010-03-16
Deposition Author(s): Stein, A.J., Osipiuk, J., Marshall, N., Bearden, J., Davidoff, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.226 (Depositor), 0.209 (DCC)
R-Value Work:
0.178 (Depositor), 0.187 (DCC)
R-Value Observed:
0.181 (Depositor)

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This is version 1.4 of the entry. See complete history.

Literature

The Crystal Structure of a Serine Recombinase from Sulfolobus solfataricus to 2.3A

Stein, A.J., Osipiuk, J., Marshall, N., Bearden, J., Davidoff, J., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 65.07 kDa
Atom Count: 4,427
Modeled Residue Count: 552
Deposited Residue Count: 560
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine Recombinase	A, B, C, D	140	Saccharolobus solfataricus P2	Mutation(s): 1 Gene Names: SSO1830
UniProt
Find proteins for Q97XB5 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)) Explore Q97XB5 Go to UniProtKB: Q97XB5
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q97XB5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.226 (Depositor), 0.209 (DCC)
R-Value Work: 0.178 (Depositor), 0.187 (DCC)
R-Value Observed: 0.181 (Depositor)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.363	α = 90
b = 83.363	β = 90
c = 83.862	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
SBC-Collect	data collection
SHELX	phasing
MLPHARE	phasing
DM	phasing
ARP/wARP	model building
Coot	model building

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-16

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-03-16
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-01
Changes: Refinement description
Version 1.3: 2021-10-13
Changes: Database references
Version 1.4: 2024-11-27
Changes: Data collection, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.