3LGP

Crystal structure of catalytic domain of tace with benzimidazolyl-thienyl-tartrate based inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.201 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure and activity relationships of tartrate-based TACE inhibitors.

Li, D.Popovici-Muller, J.Belanger, D.B.Caldwell, J.Dai, C.David, M.Girijavallabhan, V.M.Lavey, B.J.Lee, J.F.Liu, Z.Mazzola, R.Rizvi, R.Rosner, K.E.Shankar, B.Spitler, J.Ting, P.C.Vaccaro, H.Yu, W.Zhou, G.Zhu, Z.Niu, X.Sun, J.Guo, Z.Orth, P.Chen, S.Kozlowski, J.A.Lundell, D.J.Madison, V.McKittrick, B.Piwinski, J.J.Shih, N.Y.Shipps, G.W.Siddiqui, M.A.Strickland, C.O.

(2010) Bioorg.Med.Chem.Lett. 20: 4812-4815

  • DOI: 10.1016/j.bmcl.2010.06.104

  • PubMed Abstract: 
  • The syntheses and structure-activity relationships of the tartrate-based TACE inhibitors are discussed. The optimization of both the prime and non-prime sites led to compounds with picomolar activity. Several analogs demonstrated good rat pharmacokin ...

    The syntheses and structure-activity relationships of the tartrate-based TACE inhibitors are discussed. The optimization of both the prime and non-prime sites led to compounds with picomolar activity. Several analogs demonstrated good rat pharmacokinetics.


    Organizational Affiliation

    Department of Medicinal Chemistry, Merck Research Laboratories, Cambridge, 320 Bent Street, Cambridge, MA 02141, United States. dansu.li@spcorp.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Disintegrin and metalloproteinase domain-containing protein 17
A, B
270Homo sapiensMutation(s): 3 
Gene Names: ADAM17 (CSVP, TACE)
EC: 3.4.24.86
Find proteins for P78536 (Homo sapiens)
Go to Gene View: ADAM17
Go to UniProtKB:  P78536
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
50X
Query on 50X

Download SDF File 
Download CCD File 
A, B
(2R,3R)-4-[(2R)-2-(3-chlorophenyl)pyrrolidin-1-yl]-2,3-dihydroxy-4-oxo-N-[(5-{[2-(trifluoromethyl)-1H-benzimidazol-1-yl]methyl}thiophen-2-yl)methyl]butanamide
C28 H26 Cl F3 N4 O4 S
JSNHRUZOJTYCCL-GMKZXUHWSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
50XKi: 2 nM (98) BINDINGDB
50XKi: 2 nM BINDINGMOAD
50XKi: 2 nM PDBBIND
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.201 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 73.344α = 90.00
b = 76.618β = 90.00
c = 103.506γ = 90.00
Software Package:
Software NamePurpose
AMoREphasing
CrystalCleardata collection
HKL-2000data scaling
HKL-2000data reduction
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2010-01-21 
  • Released Date: 2010-07-28 
  • Deposition Author(s): Orth, P.

Revision History 

  • Version 1.0: 2010-07-28
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance