3LGC | pdb_00003lgc

Crystal Structure of Glutaredoxin 1 from Francisella tularensis

• PDB DOI: https://doi.org/10.2210/pdb3LGC/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Francisella tularensis subsp. tularensis SCHU S4
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-01-20 Released: 2010-02-16 
• Deposition Author(s): Maltseva, N., Kim, Y., Papazisi, L., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.77 Å
• R-Value Free: 
  0.223 (Depositor), 0.216 (DCC) 
• R-Value Work: 
  0.175 (Depositor), 0.173 (DCC) 
• R-Value Observed: 
  0.177 (Depositor) 

Literature

Crystal Structure of Glutaredoxin 1 from Francisella tularensis

Maltseva, N., Kim, Y., Papazisi, L., Anderson, W.F., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 10.73 kDa 
• Atom Count: 806 
• Modeled Residue Count: 89 
• Deposited Residue Count: 89 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glutaredoxin 1	A	89	Francisella tularensis subsp. tularensis SCHU S4	Mutation(s): 0  Gene Names: FTT0533c, FTT_0533c, grxA
UniProt
Find proteins for Q5NHD0 (Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)) Explore Q5NHD0  Go to UniProtKB:  Q5NHD0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], D [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.77 Å
• R-Value Free:  0.223 (Depositor), 0.216 (DCC) 
• R-Value Work:  0.175 (Depositor), 0.173 (DCC) 
• R-Value Observed: 0.177 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m33lgc

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.437	α = 90
b = 66.437	β = 90
c = 63.116	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
SHELX	model building
MLPHARE	phasing
DM	model building
SOLVE	phasing
RESOLVE	model building
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing
DM	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-02-16 
Deposition Author(s): Maltseva, N., Kim, Y., Papazisi, L., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2010-02-16
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2024-11-20
  Changes: Data collection, Database references, Derived calculations, Structure summary