3LG8 | pdb_00003lg8

Crystal structure of the C-terminal part of subunit E (E101-206) from Methanocaldococcus jannaschii of A1AO ATP synthase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.10 Å
  • R-Value Free: 
    0.381 (Depositor), 0.341 (DCC) 
  • R-Value Work: 
    0.353 (Depositor), 0.370 (DCC) 
  • R-Value Observed: 
    0.356 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 3LG8

This is version 1.4 of the entry. See complete history

Literature

Crystal and solution structure of the C-terminal part of the Methanocaldococcus jannaschii A1AO ATP synthase subunit E revealed by X-ray diffraction and small-angle X-ray scattering

Balakrishna, A.M.Manimekalai, M.S.S.Hunke, C.Gayen, S.Rossle, M.Jeyakanthan, J.Gruber, G.

(2010) J Bioenerg Biomembr 42: 311-320

  • DOI: https://doi.org/10.1007/s10863-010-9298-3
  • Primary Citation Related Structures: 
    3LG8

  • PubMed Abstract: 

    The structure of the C-terminus of subunit E (E(101-206)) of Methanocaldococcus jannaschii A-ATP synthase was determined at 4.1 A. E(101-206) consist of a N-terminal globular domain with three alpha-helices and four antiparallel beta-strands and an alpha-helix at the very C-terminus. Comparison of M. jannaschii E(101-206) with the C-terminus E(81-198) subunit E from Pyrococcus horikoshii OT3 revealed that the kink in the C-terminal alpha-helix of E(81-198), involved in dimer formation, is absent in M. jannaschii E(101-206). Whereas a major dimeric surface interface is present between the P. horikoshii E(81-198) molecules in the asymmetric unit, no such interaction could be found in the M. jannaschii E(101-206) molecules. To verify the oligomeric behaviour, the low resolution structure of the recombinant E(85-206) from M. jannaschii was determined using small angle X-ray scattering. Rigid body modeling of two copies of one of the monomer established a fit with a tail to tail arrangement.


  • Organizational Affiliation
    • School of Biological Sciences, Nanyang Technological University, Singapore, Republic of Singapore.

Macromolecule Content 

  • Total Structure Weight: 23.71 kDa 
  • Atom Count: 1,044 
  • Modeled Residue Count: 212 
  • Deposited Residue Count: 212 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
A-type ATP synthase subunit E
A, B
106Methanocaldococcus jannaschiiMutation(s): 0 
Gene Names: atpEMJ0220
UniProt
Find proteins for Q57673 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
Explore Q57673 
Go to UniProtKB:  Q57673
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ57673
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.10 Å
  • R-Value Free:  0.381 (Depositor), 0.341 (DCC) 
  • R-Value Work:  0.353 (Depositor), 0.370 (DCC) 
  • R-Value Observed: 0.356 (Depositor) 
Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.658α = 90
b = 73.658β = 90
c = 149.643γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-07-07
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2014-02-12
    Changes: Database references
  • Version 1.3: 2017-11-01
    Changes: Refinement description
  • Version 1.4: 2023-11-01
    Changes: Data collection, Database references, Refinement description