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Download EndnoteDevelopment of novel thiazole-urea compounds which stabalize the inactive conformation of p38 alpha
Getlik, M., Gruetter, C., Simard, J.R., Van Otterlo, W., Robubi, A., Aust, B., Rauh, D.To be published.
3LFE
Human p38 MAP Kinase in Complex with RL116
- DOI: 10.2210/pdb3LFE/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): 4
- Deposited: 2010-01-16 Released: 2011-04-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.274
- R-Value Work: 0.214
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Mitogen-activated protein kinase 14 | A | 360 | Homo sapiens | Mutation(s): 4 Gene Names: MAPK14 (CSBP, CSBP1, CSBP2, CSPB1, MXI2, SAPK2A) EC: 2.7.11.24 |
Find proteins for Q16539 (Homo sapiens) Go to Gene View: MAPK14 Go to UniProtKB: Q16539 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BOG Query on BOG | A | B-OCTYLGLUCOSIDE C14 H28 O6 HEGSGKPQLMEBJL-RKQHYHRCSA-N |  | Ligand Interaction | |
| Z84 Query on Z84 | A | 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-{4-[2-(pyridin-4-ylmethoxy)ethyl]-1,3-thiazol-2-yl}urea 1-(3-tert-butyl-1-p-tolyl-1H-pyrazol-5-yl)-3-(4-(2-(pyridin-4-ylmethoxy)ethyl)thiazol-2-yl)urea C26 H30 N6 O2 S DZVQBRGQNWDWIG-UHFFFAOYSA-N |  | Ligand Interaction | |
| External Ligand Annotations | |
|---|---|
| ID | Binding Affinity (Sequence Identity %) |
| Z84 | Kd: 586 nM (98) BINDINGDB |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.274
- R-Value Work: 0.214
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 68.630 | α = 90.00 |
| b = 70.160 | β = 90.00 |
| c = 74.180 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| PDB_EXTRACT | data extraction |
| REFMAC | refinement |
| XDS | data scaling |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2010-01-16
- Released Date: 2011-04-20
- Deposition Author(s): Gruetter, C., Simard, J.R., Getlik, M., Rauh, D.
