3LCC

Structure of a SAM-dependent halide methyltransferase from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Halomethane Biosynthesis: Structure of a SAM-Dependent Halide Methyltransferase from Arabidopsis thaliana

Schmidberger, J.W.James, A.B.Edwards, R.Naismith, J.H.O'Hagan, D.

(2010) Angew.Chem.Int.Ed.Engl. 49: 3646-3648


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative methyl chloride transferase
A
235Arabidopsis thalianaMutation(s): 0 
Gene Names: HOL1
EC: 2.1.1.n4
Find proteins for Q0WP12 (Arabidopsis thaliana)
Go to UniProtKB:  Q0WP12
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
SAH
Query on SAH

Download SDF File 
Download CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.149 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 54.430α = 90.00
b = 54.430β = 90.00
c = 263.500γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
DMphasing
MOSFLMdata reduction
PHASERphasing
ADSCdata collection
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-05-19
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance