3LBD

LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO 9-CIS RETINOIC ACID


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Conformational adaptation of agonists to the human nuclear receptor RAR gamma.

Klaholz, B.P.Renaud, J.P.Mitschler, A.Zusi, C.Chambon, P.Gronemeyer, H.Moras, D.

(1998) Nat Struct Biol 5: 199-202


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RETINOIC ACID RECEPTOR GAMMAA267Homo sapiensMutation(s): 0 
Gene Names: HRARGAMMARARGNR1B3
Find proteins for P13631 (Homo sapiens)
Explore P13631 
Go to UniProtKB:  P13631
NIH Common Fund Data Resources
PHAROS  P13631
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
9CR
Query on 9CR

Download CCD File 
A
(9cis)-retinoic acid
C20 H28 O2
SHGAZHPCJJPHSC-ZVCIMWCZSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
9CREC50:  6   nM  BindingDB
9CREC50:  52   nM  BindingDB
9CREC50:  50   nM  BindingDB
9CREC50:  3   nM  BindingDB
9CRKi:  0.699999988079071   nM  BindingDB
9CRKd:  22   nM  BindingDB
9CRKi:  20   nM  BindingDB
9CREC50:  50   nM  BindingDB
9CRKd:  17   nM  BindingDB
9CRIC50:  17   nM  BindingDB
9CREC50:  45   nM  BindingDB
9CRKd:  0.800000011920929   nM  BindingDB
9CREC50:  4   nM  BindingDB
9CREC50:  74   nM  BindingDB
9CRKd:  7   nM  BindingDB
9CRKd:  100   nM  BindingDB
9CRKd:  97   nM  BindingDB
9CRKd:  148   nM  BindingDB
9CRKd:  150   nM  BindingDB
9CRKi:  1   nM  BindingDB
9CREC50:  12   nM  BindingDB
9CREC50:  29   nM  BindingDB
9CRKi:  11   nM  BindingDB
9CREC50:  22   nM  BindingDB
9CREC50:  3.299999952316284   nM  BindingDB
9CRKi:  0.5   nM  BindingDB
9CRIC50:  7   nM  BindingDB
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.267 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.172 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.666α = 90
b = 60.666β = 90
c = 155.134γ = 90
Software Package:
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
MARXDSdata reduction
MARSCALEdata scaling
X-PLORphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 1999-03-02
    Type: Initial release
  • Version 1.1: 2008-03-25
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2016-11-16
    Changes: Non-polymer description