3LA9

Crystal structure of the trimeric autotransporter adhesin head domain BpaA from Burkholderia pseudomallei, iodide phased


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.154 
  • R-Value Work: 0.115 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of a Burkholderia pseudomallei trimeric autotransporter adhesin head.

Edwards, T.E.Phan, I.Abendroth, J.Dieterich, S.H.Masoudi, A.Guo, W.Hewitt, S.N.Kelley, A.Leibly, D.Brittnacher, M.J.Staker, B.L.Miller, S.I.Van Voorhis, W.C.Myler, P.J.Stewart, L.J.

(2010) Plos One 5: 12803-12811

  • DOI: 10.1371/journal.pone.0012803
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Pathogenic bacteria adhere to the host cell surface using a family of outer membrane proteins called Trimeric Autotransporter Adhesins (TAAs). Although TAAs are highly divergent in sequence and domain structure, they are all conceptually comprised of ...

    Pathogenic bacteria adhere to the host cell surface using a family of outer membrane proteins called Trimeric Autotransporter Adhesins (TAAs). Although TAAs are highly divergent in sequence and domain structure, they are all conceptually comprised of a C-terminal membrane anchoring domain and an N-terminal passenger domain. Passenger domains consist of a secretion sequence, a head region that facilitates binding to the host cell surface, and a stalk region.


    Organizational Affiliation

    Seattle Structural Genomics Center for Infectious Disease, Seattle, Washington, USA. tedwards@embios.com




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Haemagglutinin family protein
A
200Burkholderia pseudomallei (strain 1710b)Mutation(s): 0 
Gene Names: xadA
Find proteins for Q3JLD6 (Burkholderia pseudomallei (strain 1710b))
Go to UniProtKB:  Q3JLD6
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download SDF File 
Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 50.780α = 90.00
b = 50.780β = 90.00
c = 135.660γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
REFMACrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-09-27
    Type: Data collection