3L4E

1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e

• PDB DOI: https://doi.org/10.2210/pdb3L4E/pdb

• Classification: HYDROLASE
• Organism(s): Listeria monocytogenes EGD-e
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-12-19 Released: 2010-07-14 
• Deposition Author(s): Brunzelle, J.S., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.222 
• R-Value Work: 0.169 
• R-Value Observed: 0.169 

Literature

1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e

Brunzelle, J.S., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 23.16 kDa 
• Atom Count: 1,844 
• Modelled Residue Count: 202 
• Deposited Residue Count: 206 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized peptidase Lmo0363	A	206	Listeria monocytogenes EGD-e	Mutation(s): 0  Gene Names: lmo0363 EC: 3.4.21
UniProt
Find proteins for P58495 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore P58495  Go to UniProtKB:  P58495

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	B [auth A], C [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.222 
• R-Value Work: 0.169 
• R-Value Observed: 0.169 
• Space Group: P 6₅ 2 2
• Diffraction Data: https://doi.org/10.18430/M33L4E

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.821	α = 90
b = 67.821	β = 90
c = 155.169	γ = 120

Software Package:

Software Name	Purpose
BLU-MAX	data collection
PHENIX	model building
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-07-14 
Deposition Author(s): Brunzelle, J.S., Onopriyenko, O., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2010-07-14
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance