3L30

Crystal structure of porcine pancreatic phospholipase A2 complexed with dihydroxyberberine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of porcine pancreatic phospholipase A2 complexed with dihydroxyberberine

Naveen, C.Prasanth, G.K.Abhilash, J.Pradeep, M.Ponnuraj, K.Sadasivan, C.Haridas, M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phospholipase A2, major isoenzyme
A
124Sus scrofaMutation(s): 0 
Gene Names: PLA2G1B
EC: 3.1.1.4
Find proteins for P00592 (Sus scrofa)
Go to Gene View: PLA2G1B
Go to UniProtKB:  P00592
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
DBW
Query on DBW

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Download CCD File 
A
4,14-dihydro-8H-[1,3]dioxolo[4,5-g]isoquino[3,2-a]isoquinoline-9,10-diol
C18 H15 N O4
LCTIMSLMTIKISI-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.163 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 68.880α = 90.00
b = 68.880β = 90.00
c = 70.160γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
AUTOMARdata reduction
MOLREPphasing
MAR345dtbdata collection
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-01-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Version format compliance