Structural investigation of hOGG1 bound to a fluorinated oxoG analog
Verdine, G.L., Lee, S.M.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
N-glycosylase/DNA lyase | A | 317 | Homo sapiens | Mutation(s): 1  Gene Names: MMH, MUTM, OGG1, OGH1 EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data) | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15527 (Homo sapiens) Explore O15527  Go to UniProtKB:  O15527 | |||||
PHAROS:  O15527 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O15527 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3') | B | 13 | synthetic construct | ![]() | |
Protein Feature ViewExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') | C | 12 | synthetic construct | ![]() | |
Protein Feature ViewExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | D [auth A], E [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 92.4 | α = 90 |
b = 92.4 | β = 90 |
c = 212.5 | γ = 120 |
Software Name | Purpose |
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DENZO | data reduction |
SCALEPACK | data scaling |
CNS | refinement |
PDB_EXTRACT | data extraction |
CNS | phasing |