Download MendeleyStructural investigation of hOGG1 bound to a fluorinated oxoG analog
Verdine, G.L., Lee, S.M.To be published.
3KTU
Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA
- PDB DOI: 10.2210/pdb3KTU/pdb
- NDB: NA0405
- Classification: HYDROLASE,LYASE/DNA
- Organism(s): Homo sapiens, synthetic construct
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2009-11-26 Released: 2010-07-14
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.257
- R-Value Work: 0.225
- R-Value Observed: 0.225
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N-glycosylase/DNA lyase | A | 317 | Homo sapiens | Mutation(s): 1 Gene Names: MMH, MUTM, OGG1, OGH1 EC: 3.2.2 (PDB Primary Data), 4.2.99.18 (PDB Primary Data) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15527 (Homo sapiens) Explore O15527 Go to UniProtKB: O15527 | |||||
PHAROS: O15527 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O15527 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3') | B | 13 | synthetic construct |  | |
Protein Feature ViewExpand | |||||
| |||||
Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') | C | 12 | synthetic construct |  | |
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | D [auth A], E [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.257
- R-Value Work: 0.225
- R-Value Observed: 0.225
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 92.4 | α = 90 |
| b = 92.4 | β = 90 |
| c = 212.5 | γ = 120 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2010-07-14 Deposition Author(s): Verdine, G.L., Lee, S.M.
Revision History (Full details and data files)
- Version 1.0: 2010-07-14
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description, Source and taxonomy - Version 1.3: 2021-10-13
Changes: Database references, Derived calculations
