Download Mendeley
Download EndnoteCrystal structure of Putative sugar isomerase (YP_050048.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 1.54 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
3KTC
Crystal structure of Putative sugar isomerase (YP_050048.1) from ERWINIA CAROTOVORA ATROSEPTICA SCRI1043 at 1.54 A resolution
- DOI: 10.2210/pdb3KTC/pdb
- Classification: ISOMERASE
- Organism(s): Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
- Expression System: Escherichia coli
- Deposited: 2009-11-24 Released: 2009-12-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.157
- R-Value Work: 0.136
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Xylose isomerase | A, B | 333 | Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) | Mutation(s): 0 Gene Names: apsI EC: 5.3.1.- |
Find proteins for Q6D5T7 (Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)) Go to UniProtKB: Q6D5T7 | ||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | A, B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A, B | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| FE Query on FE | A, B | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.157
- R-Value Work: 0.136
- Space Group: P 31 2 1
- Diffraction Data DOI:
10.18430/M33KTC Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 79.653 | α = 90.00 |
| b = 79.653 | β = 90.00 |
| c = 194.406 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SHELXD | phasing |
| autoSHARP | phasing |
| XSCALE | data scaling |
| SHELX | phasing |
| MolProbity | model building |
Entry History
Deposition Data
- Deposited Date: 2009-11-24
- Released Date: 2009-12-22
- Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History
- Version 1.0: 2009-12-22
Type: Initial release - Version 1.1: 2011-07-13
Type: Advisory, Version format compliance - Version 1.2: 2017-10-25
Type: Author supporting evidence, Refinement description
