3KSU | pdb_00003ksu

Crystal structure of short-chain dehydrogenase from oenococcus oeni psu-1

• PDB DOI: https://doi.org/10.2210/pdb3KSU/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Oenococcus oeni PSU-1
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-11-23 Released: 2009-12-01 
• Deposition Author(s): Patskovsky, Y., Toro, R., Gilmore, M., Miller, S., Sauder, J.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.286 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.230 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.232 (Depositor) 

Literature

Crystal Structure of Short-Chain Dehydrogenase from Oenococcus Oeni Psu-1

Patskovsky, Y., Toro, R., Gilmore, M., Miller, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 58.18 kDa 
• Atom Count: 3,651 
• Modeled Residue Count: 457 
• Deposited Residue Count: 524 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-acyl carrier protein reductase	A, B	262	Oenococcus oeni PSU-1	Mutation(s): 0  Gene Names: OEOE_0078
UniProt
Find proteins for Q04HJ2 (Oenococcus oeni (strain ATCC BAA-331 / PSU-1)) Explore Q04HJ2  Go to UniProtKB:  Q04HJ2

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.286 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.230 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.232 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.589	α = 90
b = 84.207	β = 90
c = 87.872	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
PHENIX	model building
RESOLVE	model building
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing
PHENIX	phasing
RESOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-12-01 
Deposition Author(s): Patskovsky, Y., Toro, R., Gilmore, M., Miller, S., Sauder, J.M., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2009-12-01
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2018-11-21
  Changes: Data collection, Structure summary
• Version 1.3: 2021-02-10
  Changes: Database references, Structure summary
• Version 1.4: 2024-02-21
  Changes: Data collection, Database references