3KSG | pdb_00003ksg

structure of fRMsr of Staphylococcus aureus (complex with substrate)

PDB DOI: https://doi.org/10.2210/pdb3KSG/pdb

Classification: OXIDOREDUCTASE
Organism(s): Staphylococcus aureus subsp. aureus MRSA252
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2009-11-23 Released: 2010-05-26
Deposition Author(s): Bong, S.M., Chi, Y.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.252 (Depositor), 0.247 (DCC)
R-Value Work:
0.222 (Depositor), 0.221 (DCC)
R-Value Observed:
0.222 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Structure of fRMsr of Staphylococcus aureus

Bong, S.M., Chi, Y.M.

To be published.

Macromolecule Content

Total Structure Weight: 36.19 kDa
Atom Count: 2,455
Modeled Residue Count: 306
Deposited Residue Count: 320
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A, B	160	Staphylococcus aureus subsp. aureus MRSA252	Mutation(s): 1 Gene Names: SAR1796 EC: 1.8.4.14

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SME Query on SME Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	METHIONINE SULFOXIDE C₅ H₁₁ N O₃ S QEFRNWWLZKMPFJ-ZXPFJRLXSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.252 (Depositor), 0.247 (DCC)
R-Value Work: 0.222 (Depositor), 0.221 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 41.582	α = 90
b = 87.492	β = 101.25
c = 42.862	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-05-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-05-26
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.