3KFO

Crystal structure of the C-terminal domain from the nuclear pore complex component NUP133 from Saccharomyces cerevisiae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.191 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex.

Sampathkumar, P.Gheyi, T.Miller, S.A.Bain, K.T.Dickey, M.Bonanno, J.B.Kim, S.J.Phillips, J.Pieper, U.Fernandez-Martinez, J.Franke, J.D.Martel, A.Tsuruta, H.Atwell, S.Thompson, D.A.Emtage, J.S.Wasserman, S.R.Rout, M.P.Sali, A.Sauder, J.M.Burley, S.K.

(2011) Proteins 79: 1672-1677


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoporin NUP133
A
288Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NUP133 (RAT3)
Find proteins for P36161 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: NUP133
Go to UniProtKB:  P36161
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.191 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 47.433α = 90.00
b = 52.678β = 90.00
c = 76.674γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
SHELXEmodel building
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SHELXphasing
SHELXDphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2010-01-26
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description