3KES

Crystal structure of the autoproteolytic domain from the nuclear pore complex component NUP145 from Saccharomyces cerevisiae in the Hexagonal, P61 space group


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.

Sampathkumar, P.Ozyurt, S.A.Do, J.Bain, K.T.Dickey, M.Rodgers, L.A.Gheyi, T.Sali, A.Kim, S.J.Phillips, J.Pieper, U.Fernandez-Martinez, J.Franke, J.D.Martel, A.Tsuruta, H.Atwell, S.Thompson, D.A.Emtage, J.S.Wasserman, S.R.Rout, M.P.Sauder, J.M.Burley, S.K.

(2010) Proteins 78: 1992-1998


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nucleoporin NUP145
A, B
174Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: NUP145 (RAT10)
EC: 3.4.21.-
Find proteins for P49687 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P49687
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.190 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 135.052α = 90.00
b = 135.052β = 90.00
c = 56.154γ = 120.00
Software Package:
Software NamePurpose
SHELXEmodel building
MOSFLMdata reduction
PDB_EXTRACTdata extraction
SHELXDphasing
SCALAdata scaling
SHELXphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2012-10-10
    Type: Database references
  • Version 1.3: 2017-11-01
    Type: Advisory, Refinement description