Download MendeleyCrystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP
Park, A.K., Moon, J.H., Chi, Y.M.To be published.
3KE5 | pdb_00003ke5
Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP
- PDB DOI: https://doi.org/10.2210/pdb3KE5/pdb
- Classification: TRANSFERASE
- Organism(s): Bacillus cereus ATCC 14579
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-10-23 Released: 2010-10-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225 (Depositor), 0.190 (DCC)
- R-Value Work: 0.198 (Depositor), 0.190 (DCC)
Starting Model: experimental
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This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical Cytosolic Protein | 213 | Bacillus cereus ATCC 14579 | Mutation(s): 0 EC: 2.5.1.17 |  | |
UniProt | |||||
Find proteins for Q813T7 (Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)) Explore Q813T7 Go to UniProtKB: Q813T7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q813T7 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | D [auth A], F [auth B], H [auth C] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| MG Query on MG | E [auth A], G [auth B], I [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.225 (Depositor), 0.190 (DCC)
- R-Value Work: 0.198 (Depositor), 0.190 (DCC)
Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.925 | α = 90 |
| b = 137.042 | β = 90 |
| c = 158.263 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| CNS | phasing |
Entry History
Deposition Data
- Released Date: 2010-10-20 Deposition Author(s): Park, A.K., Moon, J.H., Chi, Y.M.
Revision History (Full details and data files)
- Version 1.0: 2010-10-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2017-11-01
Changes: Refinement description - Version 1.3: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
