3K8W | pdb_00003k8w

Crysatl structure of a bacterial cell-surface flagellin N20C45

PDB DOI: https://doi.org/10.2210/pdb3K8W/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Sphingomonas sp. A1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-10-15 Released: 2010-10-06
Deposition Author(s): Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.223 (Depositor), 0.220 (DCC)
R-Value Work:
0.197 (Depositor), 0.200 (DCC)
R-Value Observed:
0.198 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of N- and C-terminal regions of flagellin

Maruyama, Y., Momma, M., Mikami, B., Hashimoto, W., Murata, K.

To be published.

Macromolecule Content

Total Structure Weight: 33.9 kDa
Atom Count: 2,449
Modeled Residue Count: 296
Deposited Residue Count: 326
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellin homolog	A	326	Sphingomonas sp. A1	Mutation(s): 0
UniProt
Find proteins for Q2PHB2 (Sphingomonas sp. A1) Explore Q2PHB2 Go to UniProtKB: Q2PHB2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q2PHB2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.223 (Depositor), 0.220 (DCC)
R-Value Work: 0.197 (Depositor), 0.200 (DCC)
R-Value Observed: 0.198 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.894	α = 90
b = 71.317	β = 117.13
c = 50.976	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-10-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-10-06
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.