3K6H

Crystal structure of a nitroreductase family protein from Agrobacterium tumefaciens str. C58


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.192 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of a nitroreductase family protein from Agrobacterium tumefaciens str. C58

Tan, K.Xu, X.Cui, H.Savchenko, A.Edwards, A.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nitroreductase family protein
A, B
197Agrobacterium fabrum (strain C58 / ATCC 33970)Mutation(s): 0 
Find proteins for A9CIP6 (Agrobacterium fabrum (strain C58 / ATCC 33970))
Go to UniProtKB:  A9CIP6
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
A, B
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.192 
  • Space Group: I 4 2 2
Unit Cell:
Length (Å)Angle (°)
a = 127.470α = 90.00
b = 127.470β = 90.00
c = 150.983γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
DMphasing
DMmodel building
PHENIXrefinement
MLPHAREphasing
HKL-3000phasing
RESOLVEphasing
SBC-Collectdata collection
SHELXDphasing
RESOLVEmodel building
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-10-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance