3K4W | pdb_00003k4w

CRYSTAL STRUCTURE OF Uncharacterized Tim-Barrel Protein Bb4693 From Bordetella Bronchiseptica

PDB DOI: https://doi.org/10.2210/pdb3K4W/pdb

Classification: structural genomics, unknown function
Organism(s): Bordetella bronchiseptica
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-10-06 Released: 2009-11-24
Deposition Author(s): Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free:
0.251 (Depositor), 0.251 (DCC)
R-Value Work:
0.191 (Depositor), 0.192 (DCC)
R-Value Observed:
0.194 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3K4W

This is version 1.6 of the entry. See complete history.

Literature

CRYSTAL STRUCTURE OF Uncharacterized Tim-Barrel Protein Bb4693 From Bordetella Bronchiseptica

Malashkevich, V.N., Toro, R., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Macromolecule Content

Total Structure Weight: 392.61 kDa
Atom Count: 28,586
Modeled Residue Count: 3,372
Deposited Residue Count: 3,492
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein Bb4693	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	291	Bordetella bronchiseptica	Mutation(s): 0 Gene Names: BB4693
UniProt
Find proteins for A0A0H3M034 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3M034 Go to UniProtKB: A0A0H3M034
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3M034
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.92 Å
R-Value Free: 0.251 (Depositor), 0.251 (DCC)
R-Value Work: 0.191 (Depositor), 0.192 (DCC)
R-Value Observed: 0.194 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.923	α = 90
b = 248.768	β = 104.92
c = 90.618	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-11-24

Deposition Author(s):

Malashkevich, V.N.

New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History (Full details and data files)

Version 1.0: 2009-11-24
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.2: 2012-10-24
Changes: Structure summary
Version 1.3: 2017-11-29
Changes: Database references
Version 1.4: 2018-11-21
Changes: Data collection, Structure summary
Version 1.5: 2021-02-10
Changes: Database references, Structure summary
Version 1.6: 2024-02-21
Changes: Data collection, Database references

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