3JV0 | pdb_00003jv0

Crystal structure of a mutant of RelB dimerization domain(M6)

PDB DOI: https://doi.org/10.2210/pdb3JV0/pdb

Classification: TRANSCRIPTION
Organism(s): Mus musculus
Expression System: Escherichia coli BL21
Mutation(s): Yes

Deposited: 2009-09-15 Released: 2010-11-24
Deposition Author(s): Vu, D., Huang, D.B., Ghosh, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.258 (Depositor), 0.260 (DCC)
R-Value Work:
0.221 (Depositor), 0.220 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Instability of the RelB dimerization domain is functionally importent

Vu, D., Huang, D.B., Ghosh, G.

To be published.

Macromolecule Content

Total Structure Weight: 11.5 kDa
Atom Count: 806
Modeled Residue Count: 101
Deposited Residue Count: 101
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor RelB	A	101	Mus musculus	Mutation(s): 4 Gene Names: RelB
UniProt
Find proteins for Q04863 (Mus musculus) Explore Q04863 Go to UniProtKB: Q04863
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q04863
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.258 (Depositor), 0.260 (DCC)
R-Value Work: 0.221 (Depositor), 0.220 (DCC)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.74	α = 90
b = 71.74	β = 90
c = 61.08	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
HKL-2000	data reduction
HKL-2000	data scaling
AMoRE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-11-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-11-24
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-10-13
Changes: Database references
Version 1.3: 2023-09-06
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.