3JUZ | pdb_00003juz

Crystal structure of a mutant of RelB dimerization domain(M5)

• PDB DOI: https://doi.org/10.2210/pdb3JUZ/pdb

• Classification: TRANSCRIPTION
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2009-09-15 Released: 2010-11-24 
• Deposition Author(s): Vu, D., Huang, D.B., Ghosh, G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.51 Å
• R-Value Free: 
  0.226 (Depositor), 0.238 (DCC) 
• R-Value Work: 
  0.198 (Depositor), 0.211 (DCC) 

Starting Model: experimental

Literature

Instability of the RelB dimerization domain is functionally important

Vu, D., Huang, D.B., Ghosh, G.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.46 kDa 
• Atom Count: 880 
• Modeled Residue Count: 101 
• Deposited Residue Count: 101 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcription factor RelB	A	101	Mus musculus	Mutation(s): 4  Gene Names: RelB
UniProt
Find proteins for Q04863 (Mus musculus) Explore Q04863  Go to UniProtKB:  Q04863

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.51 Å
• R-Value Free:  0.226 (Depositor), 0.238 (DCC) 
• R-Value Work:  0.198 (Depositor), 0.211 (DCC) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.84	α = 90
b = 71.84	β = 90
c = 60.9	γ = 120

Software Package:

Software Name	Purpose
AMoRE	phasing
CNS	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-11-24 
Deposition Author(s): Vu, D., Huang, D.B., Ghosh, G.

Revision History  

• Version 1.0: 2010-11-24
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2021-10-13
  Changes: Database references
• Version 1.3: 2023-09-06
  Changes: Data collection, Refinement description