3JTF

The CBS Domain Pair Structure of a magnesium and cobalt efflux protein from Bordetella parapertussis in complex with AMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.175 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The CBS Domain Pair Structure of a magnesium and cobalt efflux protein from Bordetella parapertussis in complex with AMP

Cuff, M.E.Tesar, C.Cobb, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Magnesium and cobalt efflux protein
A, B
129Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)Mutation(s): 0 
Gene Names: corC
Find proteins for Q7WB69 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253))
Go to UniProtKB:  Q7WB69
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
AMP
Query on AMP

Download SDF File 
Download CCD File 
A, B
ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.175 
  • Space Group: P 43
Unit Cell:
Length (Å)Angle (°)
a = 84.850α = 90.00
b = 84.850β = 90.00
c = 38.030γ = 90.00
Software Package:
Software NamePurpose
HKL-3000phasing
SOLVEphasing
HKL-3000data scaling
SHELXEmodel building
RESOLVEphasing
Cootmodel building
SBC-Collectdata collection
DMphasing
CCP4phasing
DENZOdata reduction
REFMACrefinement
SCALEPACKdata scaling
SHELXDphasing
Omodel building
MLPHAREphasing
HKL-3000data reduction
ARP/wARPmodel building
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-12-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Advisory, Refinement description, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description