3JCA

Core model of the Mouse Mammary Tumor Virus intasome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function

Ballandras-Colas, A.Brown, M.Cook, N.J.Dewdney, T.G.Demeler, B.Cherepanov, P.Lyumkis, D.Engelman, A.N.

(2016) Nature 530: 358-361


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Integrase
A, B, E, F
265Mouse mammary tumor virus (strain BR6)Gene Names: pol
EC: 3.1.26.4, 3.1.-.-, 2.7.7.49, 2.7.7.7, 2.7.7.-
Find proteins for P03365 (Mouse mammary tumor virus (strain BR6))
Go to UniProtKB:  P03365
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Integrase
C, D, G, H
49Mouse mammary tumor virus (strain BR6)Gene Names: pol
EC: 3.1.26.4, 3.1.-.-, 2.7.7.49, 2.7.7.7, 2.7.7.-
Find proteins for P03365 (Mouse mammary tumor virus (strain BR6))
Go to UniProtKB:  P03365
Entity ID: 3
MoleculeChainsLengthOrganism
5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*CP*TP*G)-3'I,K22Mouse mammary tumor virus
Entity ID: 4
MoleculeChainsLengthOrganism
5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*GP*CP*GP*GP*CP*A)-3'J,L20Mouse mammary tumor virus
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, E, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-02-17
    Type: Initial release
  • Version 1.1: 2016-02-24
    Type: Database references