3J7Y

Structure of the large ribosomal subunit from human mitochondria

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structure of the large ribosomal subunit from human mitochondria.

Brown, A., Amunts, A., Bai, X.C., Sugimoto, Y., Edwards, P.C., Murshudov, G., Scheres, S.H., Ramakrishnan, V.

(2014) Science 346: 718-722

  • DOI: 10.1126/science.1258026
  • Primary Citation of Related Structures:  
    3J7Y

  • PubMed Abstract: 

    • Human mitochondrial ribosomes are highly divergent from all other known ribosomes and are specialized to exclusively translate membrane proteins. They are linked with hereditary mitochondrial diseases and are often the unintended targets of various c ...

    Human mitochondrial ribosomes are highly divergent from all other known ribosomes and are specialized to exclusively translate membrane proteins. They are linked with hereditary mitochondrial diseases and are often the unintended targets of various clinically useful antibiotics. Using single-particle cryogenic electron microscopy, we have determined the structure of its large subunit to 3.4 angstrom resolution, revealing 48 proteins, 21 of which are specific to mitochondria. The structure unveils an adaptation of the exit tunnel for hydrophobic nascent peptides, extensive remodeling of the central protuberance, including recruitment of mitochondrial valine transfer RNA (tRNA(Val)) to play an integral structural role, and changes in the tRNA binding sites related to the unusual characteristics of mitochondrial tRNAs.

    Organizational Affiliation: 

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.



Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
uL2D305Homo sapiensMutation(s): 0 
Gene Names: MRPL2, CGI-22
Find proteins for Q5T653 (Homo sapiens)
Explore Q5T653 
Go to UniProtKB:  Q5T653
NIH Common Fund Data Resources
PHAROS  Q5T653
GTEx  ENSG00000112651
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
uL3E348Homo sapiensMutation(s): 0 
Gene Names: MRPL3, MRL3, RPML3
Find proteins for P09001 (Homo sapiens)
Explore P09001 
Go to UniProtKB:  P09001
NIH Common Fund Data Resources
PHAROS  P09001
GTEx  ENSG00000114686
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
uL4F311Homo sapiensMutation(s): 0 
Gene Names: MRPL4, CDABP0091, CGI-28
Find proteins for Q9BYD3 (Homo sapiens)
Explore Q9BYD3 
Go to UniProtKB:  Q9BYD3
NIH Common Fund Data Resources
PHAROS  Q9BYD3
GTEx  ENSG00000105364
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
bL9H267Homo sapiensMutation(s): 0 
Gene Names: MRPL9
Find proteins for Q9BYD2 (Homo sapiens)
Explore Q9BYD2 
Go to UniProtKB:  Q9BYD2
NIH Common Fund Data Resources
PHAROS  Q9BYD2
GTEx  ENSG00000143436
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
uL10I261Homo sapiensMutation(s): 0 
Gene Names: MRPL10, MRPL8, RPML8
Find proteins for Q7Z7H8 (Homo sapiens)
Explore Q7Z7H8 
Go to UniProtKB:  Q7Z7H8
NIH Common Fund Data Resources
PHAROS  Q7Z7H8
GTEx  ENSG00000159111
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
uL11J192Homo sapiensMutation(s): 0 
Gene Names: MRPL11, CGI-113
Find proteins for Q9Y3B7 (Homo sapiens)
Explore Q9Y3B7 
Go to UniProtKB:  Q9Y3B7
NIH Common Fund Data Resources
PHAROS  Q9Y3B7
GTEx  ENSG00000174547
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
uL13K178Homo sapiensMutation(s): 0 
Gene Names: MRPL13
Find proteins for Q9BYD1 (Homo sapiens)
Explore Q9BYD1 
Go to UniProtKB:  Q9BYD1
NIH Common Fund Data Resources
PHAROS  Q9BYD1
GTEx  ENSG00000172172
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
uL14L145Homo sapiensMutation(s): 0 
Gene Names: MRPL14, MRPL32, RPML32
Find proteins for Q6P1L8 (Homo sapiens)
Explore Q6P1L8 
Go to UniProtKB:  Q6P1L8
NIH Common Fund Data Resources
PHAROS  Q6P1L8
GTEx  ENSG00000180992
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
uL15M296Homo sapiensMutation(s): 0 
Gene Names: MRPL15, HSPC145
Find proteins for Q9P015 (Homo sapiens)
Explore Q9P015 
Go to UniProtKB:  Q9P015
NIH Common Fund Data Resources
PHAROS  Q9P015
GTEx  ENSG00000137547
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
uL16N251Homo sapiensMutation(s): 0 
Gene Names: MRPL16, PNAS-111
Find proteins for Q9NX20 (Homo sapiens)
Explore Q9NX20 
Go to UniProtKB:  Q9NX20
NIH Common Fund Data Resources
PHAROS  Q9NX20
GTEx  ENSG00000166902
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
bL17O175Homo sapiensMutation(s): 0 
Gene Names: MRPL17, LIP2
Find proteins for Q9NRX2 (Homo sapiens)
Explore Q9NRX2 
Go to UniProtKB:  Q9NRX2
NIH Common Fund Data Resources
PHAROS  Q9NRX2
GTEx  ENSG00000158042
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
uL18P179Homo sapiensMutation(s): 0 
Gene Names: MRPL18, HSPC071
Find proteins for Q9H0U6 (Homo sapiens)
Explore Q9H0U6 
Go to UniProtKB:  Q9H0U6
NIH Common Fund Data Resources
PHAROS  Q9H0U6
GTEx  ENSG00000112110
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
bL19Q292Homo sapiensMutation(s): 0 
Gene Names: MRPL19, KIAA0104, MRPL15
Find proteins for P49406 (Homo sapiens)
Explore P49406 
Go to UniProtKB:  P49406
NIH Common Fund Data Resources
PHAROS  P49406
GTEx  ENSG00000115364
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
bL20R149Homo sapiensMutation(s): 0 
Gene Names: MRPL20
Find proteins for Q9BYC9 (Homo sapiens)
Explore Q9BYC9 
Go to UniProtKB:  Q9BYC9
NIH Common Fund Data Resources
PHAROS  Q9BYC9
GTEx  ENSG00000242485
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
bL21S205Homo sapiensMutation(s): 0 
Gene Names: MRPL21
Find proteins for Q7Z2W9 (Homo sapiens)
Explore Q7Z2W9 
Go to UniProtKB:  Q7Z2W9
NIH Common Fund Data Resources
GTEx  ENSG00000197345
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
uL22T212Homo sapiensMutation(s): 0 
Gene Names: MRPL22, MRPL25, RPML25, HSPC158
Find proteins for Q9NWU5 (Homo sapiens)
Explore Q9NWU5 
Go to UniProtKB:  Q9NWU5
NIH Common Fund Data Resources
PHAROS  Q9NWU5
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
uL23U153Homo sapiensMutation(s): 0 
Gene Names: MRPL23, L23MRP, RPL23L
Find proteins for Q16540 (Homo sapiens)
Explore Q16540 
Go to UniProtKB:  Q16540
NIH Common Fund Data Resources
PHAROS  Q16540
GTEx  ENSG00000214026
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
uL24V216Homo sapiensMutation(s): 0 
Gene Names: MRPL24
Find proteins for Q96A35 (Homo sapiens)
Explore Q96A35 
Go to UniProtKB:  Q96A35
NIH Common Fund Data Resources
PHAROS  Q96A35
GTEx  ENSG00000143314
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
bL27W148Homo sapiensMutation(s): 0 
Gene Names: MRPL27, HSPC250
Find proteins for Q9P0M9 (Homo sapiens)
Explore Q9P0M9 
Go to UniProtKB:  Q9P0M9
NIH Common Fund Data Resources
PHAROS  Q9P0M9
GTEx  ENSG00000108826
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
bL28X256Homo sapiensMutation(s): 0 
Gene Names: MRPL28, MAAT1
Find proteins for Q13084 (Homo sapiens)
Explore Q13084 
Go to UniProtKB:  Q13084
NIH Common Fund Data Resources
PHAROS  Q13084
GTEx  ENSG00000086504
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
uL29Y250Homo sapiensMutation(s): 0 
Gene Names: MRPL47, NCM1, CGI-204
Find proteins for Q9HD33 (Homo sapiens)
Explore Q9HD33 
Go to UniProtKB:  Q9HD33
NIH Common Fund Data Resources
PHAROS  Q9HD33
GTEx  ENSG00000136522
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
uL30Z161Homo sapiensMutation(s): 0 
Gene Names: MRPL30, MRPL28, RPML28, HSPC249
Find proteins for Q8TCC3 (Homo sapiens)
Explore Q8TCC3 
Go to UniProtKB:  Q8TCC3
NIH Common Fund Data Resources
PHAROS  Q8TCC3
GTEx  ENSG00000185414
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
bL320188Homo sapiensMutation(s): 0 
Gene Names: MRPL32, HSPC283
Find proteins for Q9BYC8 (Homo sapiens)
Explore Q9BYC8 
Go to UniProtKB:  Q9BYC8
NIH Common Fund Data Resources
PHAROS  Q9BYC8
GTEx  ENSG00000106591
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
bL33165Homo sapiensMutation(s): 0 
Gene Names: MRPL33, C2orf1
Find proteins for O75394 (Homo sapiens)
Explore O75394 
Go to UniProtKB:  O75394
NIH Common Fund Data Resources
PHAROS  O75394
GTEx  ENSG00000243147
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
bL34292Homo sapiensMutation(s): 0 
Gene Names: MRPL34
Find proteins for Q9BQ48 (Homo sapiens)
Explore Q9BQ48 
Go to UniProtKB:  Q9BQ48
NIH Common Fund Data Resources
PHAROS  Q9BQ48
GTEx  ENSG00000130312
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
bL353188Homo sapiensMutation(s): 0 
Gene Names: MRPL35, BM-007
Find proteins for Q9NZE8 (Homo sapiens)
Explore Q9NZE8 
Go to UniProtKB:  Q9NZE8
NIH Common Fund Data Resources
PHAROS  Q9NZE8
GTEx  ENSG00000132313
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
bL364103Homo sapiensMutation(s): 0 
Gene Names: MRPL36, BRIP1
Find proteins for Q9P0J6 (Homo sapiens)
Explore Q9P0J6 
Go to UniProtKB:  Q9P0J6
NIH Common Fund Data Resources
PHAROS  Q9P0J6
GTEx  ENSG00000171421
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
mL375423Homo sapiensMutation(s): 0 
Gene Names: MRPL37, MRPL2, RPML2, HSPC235
Find proteins for Q9BZE1 (Homo sapiens)
Explore Q9BZE1 
Go to UniProtKB:  Q9BZE1
NIH Common Fund Data Resources
PHAROS  Q9BZE1
GTEx  ENSG00000116221
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
mL386380Homo sapiensMutation(s): 0 
Gene Names: MRPL38, HSPC262
Find proteins for Q96DV4 (Homo sapiens)
Explore Q96DV4 
Go to UniProtKB:  Q96DV4
NIH Common Fund Data Resources
PHAROS  Q96DV4
GTEx  ENSG00000204316
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
mL397338Homo sapiensMutation(s): 0 
Gene Names: MRPL39, C21orf92, MRPL5, RPML5, MSTP003, PRED22
Find proteins for Q9NYK5 (Homo sapiens)
Explore Q9NYK5 
Go to UniProtKB:  Q9NYK5
NIH Common Fund Data Resources
PHAROS  Q9NYK5
GTEx  ENSG00000154719
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
mL408206Homo sapiensMutation(s): 0 
Gene Names: MRPL40, NLVCF, URIM
Find proteins for Q9NQ50 (Homo sapiens)
Explore Q9NQ50 
Go to UniProtKB:  Q9NQ50
NIH Common Fund Data Resources
PHAROS  Q9NQ50
GTEx  ENSG00000185608
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
mL419137Homo sapiensMutation(s): 0 
Gene Names: MRPL41, BMRP, MRPL27, RPML27, PIG3
Find proteins for Q8IXM3 (Homo sapiens)
Explore Q8IXM3 
Go to UniProtKB:  Q8IXM3
NIH Common Fund Data Resources
PHAROS  Q8IXM3
GTEx  ENSG00000182154
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
mL42a142Homo sapiensMutation(s): 0 
Gene Names: MRPL42, MRPL31, MRPS32, RPML31, HSPC204, PTD007
Find proteins for Q9Y6G3 (Homo sapiens)
Explore Q9Y6G3 
Go to UniProtKB:  Q9Y6G3
NIH Common Fund Data Resources
PHAROS  Q9Y6G3
GTEx  ENSG00000198015
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
mL43b155Homo sapiensMutation(s): 0 
Gene Names: MRPL43
Find proteins for Q8N983 (Homo sapiens)
Explore Q8N983 
Go to UniProtKB:  Q8N983
NIH Common Fund Data Resources
PHAROS  Q8N983
GTEx  ENSG00000055950
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
mL44c332Homo sapiensMutation(s): 0 
Gene Names: MRPL44
EC: 3.1.26
Find proteins for Q9H9J2 (Homo sapiens)
Explore Q9H9J2 
Go to UniProtKB:  Q9H9J2
NIH Common Fund Data Resources
PHAROS  Q9H9J2
GTEx  ENSG00000135900
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
mL45d306Homo sapiensMutation(s): 0 
Gene Names: MRPL45
Find proteins for Q9BRJ2 (Homo sapiens)
Explore Q9BRJ2 
Go to UniProtKB:  Q9BRJ2
NIH Common Fund Data Resources
PHAROS  Q9BRJ2
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
mL46e279Homo sapiensMutation(s): 0 
Gene Names: MRPL46, C15orf4, LIECG2
Find proteins for Q9H2W6 (Homo sapiens)
Explore Q9H2W6 
Go to UniProtKB:  Q9H2W6
NIH Common Fund Data Resources
GTEx  ENSG00000259494
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
mL48f211Homo sapiensMutation(s): 0 
Gene Names: MRPL48, CGI-118, HSPC290
Find proteins for Q96GC5 (Homo sapiens)
Explore Q96GC5 
Go to UniProtKB:  Q96GC5
NIH Common Fund Data Resources
PHAROS  Q96GC5
GTEx  ENSG00000175581
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
mL49g166Homo sapiensMutation(s): 0 
Gene Names: MRPL49, C11orf4, NOF1, OK/SW-cl.67
Find proteins for Q13405 (Homo sapiens)
Explore Q13405 
Go to UniProtKB:  Q13405
NIH Common Fund Data Resources
PHAROS  Q13405
GTEx  ENSG00000149792
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
mL50h158Homo sapiensMutation(s): 0 
Gene Names: MRPL50
Find proteins for Q8N5N7 (Homo sapiens)
Explore Q8N5N7 
Go to UniProtKB:  Q8N5N7
NIH Common Fund Data Resources
PHAROS  Q8N5N7
GTEx  ENSG00000136897
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
mL51i128Homo sapiensMutation(s): 0 
Gene Names: MRPL51, MRP64, CDA09, HSPC241
Find proteins for Q4U2R6 (Homo sapiens)
Explore Q4U2R6 
Go to UniProtKB:  Q4U2R6
NIH Common Fund Data Resources
PHAROS  Q4U2R6
GTEx  ENSG00000111639
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
mL52j123Homo sapiensMutation(s): 0 
Gene Names: MRPL52
Find proteins for Q86TS9 (Homo sapiens)
Explore Q86TS9 
Go to UniProtKB:  Q86TS9
NIH Common Fund Data Resources
PHAROS  Q86TS9
GTEx  ENSG00000172590
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
mL53k112Homo sapiensMutation(s): 0 
Gene Names: MRPL53
Find proteins for Q96EL3 (Homo sapiens)
Explore Q96EL3 
Go to UniProtKB:  Q96EL3
NIH Common Fund Data Resources
PHAROS  Q96EL3
GTEx  ENSG00000204822
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
mL63o102Homo sapiensMutation(s): 0 
Gene Names: MRPL57, MRP63
Find proteins for Q9BQC6 (Homo sapiens)
Explore Q9BQC6 
Go to UniProtKB:  Q9BQC6
NIH Common Fund Data Resources
PHAROS  Q9BQC6
GTEx  ENSG00000173141
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
ICT1p206Homo sapiensMutation(s): 0 
Gene Names: MRPL58, DS1, ICT1
EC: 3.1.1.29
Find proteins for Q14197 (Homo sapiens)
Explore Q14197 
Go to UniProtKB:  Q14197
NIH Common Fund Data Resources
PHAROS  Q14197
GTEx  ENSG00000167862
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
CRIF1q222Homo sapiensMutation(s): 0 
Gene Names: GADD45GIP1, MRPL59, PLINP1, PRG6
Find proteins for Q8TAE8 (Homo sapiens)
Explore Q8TAE8 
Go to UniProtKB:  Q8TAE8
NIH Common Fund Data Resources
PHAROS  Q8TAE8
GTEx  ENSG00000179271
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
bS18ar196Homo sapiensMutation(s): 0 
Gene Names: MRPS18A
Find proteins for Q9NVS2 (Homo sapiens)
Explore Q9NVS2 
Go to UniProtKB:  Q9NVS2
NIH Common Fund Data Resources
PHAROS  Q9NVS2
GTEx  ENSG00000096080
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
mS30s439Homo sapiensMutation(s): 0 
Gene Names: MRPS30, PDCD9, BM-047
Find proteins for Q9NP92 (Homo sapiens)
Explore Q9NP92 
Go to UniProtKB:  Q9NP92
NIH Common Fund Data Resources
PHAROS  Q9NP92
GTEx  ENSG00000112996
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
unknown proteint127Homo sapiensMutation(s): 0 
Protein Feature View
Expand
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
16S rRNAA1559Homo sapiens
Find similar nucleic acids by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
mt-tRNAValB73Homo sapiens
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A
Query on A
Download CCD File 
A
ADENOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N		 Ligand Interaction
ZN
Query on ZN
Download CCD File 
0, 4, r
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download CCD File 
A, E
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-10-15
    Type: Initial release
  • Version 1.1: 2014-11-19
    Changes: Database references
  • Version 1.2: 2018-07-18
    Changes: Data collection