3J7Y

Structure of the large ribosomal subunit from human mitochondria

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Structure of the large ribosomal subunit from human mitochondria.

Brown, A., Amunts, A., Bai, X.C., Sugimoto, Y., Edwards, P.C., Murshudov, G., Scheres, S.H., Ramakrishnan, V.

(2014) Science 346: 718-722

  • DOI: 10.1126/science.1258026
  • Primary Citation of Related Structures:  
    3J7Y

  • PubMed Abstract: 

    • Human mitochondrial ribosomes are highly divergent from all other known ribosomes and are specialized to exclusively translate membrane proteins. They are linked with hereditary mitochondrial diseases and are often the unintended targets of various clinically useful antibiotics ...

    Human mitochondrial ribosomes are highly divergent from all other known ribosomes and are specialized to exclusively translate membrane proteins. They are linked with hereditary mitochondrial diseases and are often the unintended targets of various clinically useful antibiotics. Using single-particle cryogenic electron microscopy, we have determined the structure of its large subunit to 3.4 angstrom resolution, revealing 48 proteins, 21 of which are specific to mitochondria. The structure unveils an adaptation of the exit tunnel for hydrophobic nascent peptides, extensive remodeling of the central protuberance, including recruitment of mitochondrial valine transfer RNA (tRNA(Val)) to play an integral structural role, and changes in the tRNA binding sites related to the unusual characteristics of mitochondrial tRNAs.

    Organizational Affiliation: 

    MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.



Macromolecules

Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
uL2C [auth D]305Homo sapiensMutation(s): 0 
Gene Names: MRPL2, CGI-22
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T653 (Homo sapiens)
Explore Q5T653 
Go to UniProtKB:  Q5T653
PHAROS:  Q5T653
GTEx:  ENSG00000112651 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5T653
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
uL3D [auth E]348Homo sapiensMutation(s): 0 
Gene Names: MRPL3, MRL3, RPML3
UniProt & NIH Common Fund Data Resources
Find proteins for P09001 (Homo sapiens)
Explore P09001 
Go to UniProtKB:  P09001
PHAROS:  P09001
GTEx:  ENSG00000114686 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09001
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
uL4E [auth F]311Homo sapiensMutation(s): 0 
Gene Names: MRPL4, CDABP0091, CGI-28
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD3 (Homo sapiens)
Explore Q9BYD3 
Go to UniProtKB:  Q9BYD3
PHAROS:  Q9BYD3
GTEx:  ENSG00000105364 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
bL9F [auth H]267Homo sapiensMutation(s): 0 
Gene Names: MRPL9
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD2 (Homo sapiens)
Explore Q9BYD2 
Go to UniProtKB:  Q9BYD2
PHAROS:  Q9BYD2
GTEx:  ENSG00000143436 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
uL10G [auth I]261Homo sapiensMutation(s): 0 
Gene Names: MRPL10, MRPL8, RPML8
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7H8 (Homo sapiens)
Explore Q7Z7H8 
Go to UniProtKB:  Q7Z7H8
PHAROS:  Q7Z7H8
GTEx:  ENSG00000159111 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z7H8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
uL11H [auth J]192Homo sapiensMutation(s): 0 
Gene Names: MRPL11, CGI-113
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3B7 (Homo sapiens)
Explore Q9Y3B7 
Go to UniProtKB:  Q9Y3B7
PHAROS:  Q9Y3B7
GTEx:  ENSG00000174547 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y3B7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
uL13I [auth K]178Homo sapiensMutation(s): 0 
Gene Names: MRPL13
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD1 (Homo sapiens)
Explore Q9BYD1 
Go to UniProtKB:  Q9BYD1
PHAROS:  Q9BYD1
GTEx:  ENSG00000172172 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYD1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
uL14J [auth L]145Homo sapiensMutation(s): 0 
Gene Names: MRPL14, MRPL32, RPML32
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P1L8 (Homo sapiens)
Explore Q6P1L8 
Go to UniProtKB:  Q6P1L8
PHAROS:  Q6P1L8
GTEx:  ENSG00000180992 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6P1L8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
uL15K [auth M]296Homo sapiensMutation(s): 0 
Gene Names: MRPL15, HSPC145
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P015 (Homo sapiens)
Explore Q9P015 
Go to UniProtKB:  Q9P015
PHAROS:  Q9P015
GTEx:  ENSG00000137547 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P015
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
uL16L [auth N]251Homo sapiensMutation(s): 0 
Gene Names: MRPL16, PNAS-111
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NX20 (Homo sapiens)
Explore Q9NX20 
Go to UniProtKB:  Q9NX20
PHAROS:  Q9NX20
GTEx:  ENSG00000166902 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NX20
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
bL17M [auth O]175Homo sapiensMutation(s): 0 
Gene Names: MRPL17, LIP2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRX2 (Homo sapiens)
Explore Q9NRX2 
Go to UniProtKB:  Q9NRX2
PHAROS:  Q9NRX2
GTEx:  ENSG00000158042 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NRX2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
uL18N [auth P]179Homo sapiensMutation(s): 0 
Gene Names: MRPL18, HSPC071
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H0U6 (Homo sapiens)
Explore Q9H0U6 
Go to UniProtKB:  Q9H0U6
PHAROS:  Q9H0U6
GTEx:  ENSG00000112110 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H0U6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
bL19O [auth Q]292Homo sapiensMutation(s): 0 
Gene Names: MRPL19, KIAA0104, MRPL15
UniProt & NIH Common Fund Data Resources
Find proteins for P49406 (Homo sapiens)
Explore P49406 
Go to UniProtKB:  P49406
PHAROS:  P49406
GTEx:  ENSG00000115364 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP49406
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
bL20P [auth R]149Homo sapiensMutation(s): 0 
Gene Names: MRPL20
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC9 (Homo sapiens)
Explore Q9BYC9 
Go to UniProtKB:  Q9BYC9
PHAROS:  Q9BYC9
GTEx:  ENSG00000242485 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYC9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
bL21Q [auth S]205Homo sapiensMutation(s): 0 
Gene Names: MRPL21
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z2W9 (Homo sapiens)
Explore Q7Z2W9 
Go to UniProtKB:  Q7Z2W9
GTEx:  ENSG00000197345 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z2W9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
uL22R [auth T]212Homo sapiensMutation(s): 0 
Gene Names: MRPL22, MRPL25, RPML25, HSPC158
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWU5 (Homo sapiens)
Explore Q9NWU5 
Go to UniProtKB:  Q9NWU5
PHAROS:  Q9NWU5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NWU5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
uL23S [auth U]153Homo sapiensMutation(s): 0 
Gene Names: MRPL23, L23MRP, RPL23L
UniProt & NIH Common Fund Data Resources
Find proteins for Q16540 (Homo sapiens)
Explore Q16540 
Go to UniProtKB:  Q16540
PHAROS:  Q16540
GTEx:  ENSG00000214026 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16540
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
uL24T [auth V]216Homo sapiensMutation(s): 0 
Gene Names: MRPL24
UniProt & NIH Common Fund Data Resources
Find proteins for Q96A35 (Homo sapiens)
Explore Q96A35 
Go to UniProtKB:  Q96A35
PHAROS:  Q96A35
GTEx:  ENSG00000143314 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96A35
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
bL27U [auth W]148Homo sapiensMutation(s): 0 
Gene Names: MRPL27, HSPC250
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0M9 (Homo sapiens)
Explore Q9P0M9 
Go to UniProtKB:  Q9P0M9
PHAROS:  Q9P0M9
GTEx:  ENSG00000108826 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P0M9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
bL28V [auth X]256Homo sapiensMutation(s): 0 
Gene Names: MRPL28, MAAT1
UniProt & NIH Common Fund Data Resources
Find proteins for Q13084 (Homo sapiens)
Explore Q13084 
Go to UniProtKB:  Q13084
PHAROS:  Q13084
GTEx:  ENSG00000086504 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13084
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
uL29W [auth Y]250Homo sapiensMutation(s): 0 
Gene Names: MRPL47, NCM1, CGI-204
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HD33 (Homo sapiens)
Explore Q9HD33 
Go to UniProtKB:  Q9HD33
PHAROS:  Q9HD33
GTEx:  ENSG00000136522 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9HD33
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetailsImage
uL30X [auth Z]161Homo sapiensMutation(s): 0 
Gene Names: MRPL30, MRPL28, RPML28, HSPC249
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TCC3 (Homo sapiens)
Explore Q8TCC3 
Go to UniProtKB:  Q8TCC3
PHAROS:  Q8TCC3
GTEx:  ENSG00000185414 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TCC3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetailsImage
bL32Y [auth 0]188Homo sapiensMutation(s): 0 
Gene Names: MRPL32, HSPC283
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC8 (Homo sapiens)
Explore Q9BYC8 
Go to UniProtKB:  Q9BYC8
PHAROS:  Q9BYC8
GTEx:  ENSG00000106591 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYC8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetailsImage
bL33Z [auth 1]65Homo sapiensMutation(s): 0 
Gene Names: MRPL33, C2orf1
UniProt & NIH Common Fund Data Resources
Find proteins for O75394 (Homo sapiens)
Explore O75394 
Go to UniProtKB:  O75394
PHAROS:  O75394
GTEx:  ENSG00000243147 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75394
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
bL34AA [auth 2]92Homo sapiensMutation(s): 0 
Gene Names: MRPL34
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQ48 (Homo sapiens)
Explore Q9BQ48 
Go to UniProtKB:  Q9BQ48
PHAROS:  Q9BQ48
GTEx:  ENSG00000130312 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BQ48
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
bL35BA [auth 3]188Homo sapiensMutation(s): 0 
Gene Names: MRPL35, BM-007
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZE8 (Homo sapiens)
Explore Q9NZE8 
Go to UniProtKB:  Q9NZE8
PHAROS:  Q9NZE8
GTEx:  ENSG00000132313 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NZE8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
bL36CA [auth 4]103Homo sapiensMutation(s): 0 
Gene Names: MRPL36, BRIP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0J6 (Homo sapiens)
Explore Q9P0J6 
Go to UniProtKB:  Q9P0J6
PHAROS:  Q9P0J6
GTEx:  ENSG00000171421 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P0J6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
mL37DA [auth 5]423Homo sapiensMutation(s): 0 
Gene Names: MRPL37, MRPL2, RPML2, HSPC235
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZE1 (Homo sapiens)
Explore Q9BZE1 
Go to UniProtKB:  Q9BZE1
PHAROS:  Q9BZE1
GTEx:  ENSG00000116221 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BZE1
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
mL38EA [auth 6]380Homo sapiensMutation(s): 0 
Gene Names: MRPL38, HSPC262
UniProt & NIH Common Fund Data Resources
Find proteins for Q96DV4 (Homo sapiens)
Explore Q96DV4 
Go to UniProtKB:  Q96DV4
GTEx:  ENSG00000204316 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96DV4
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
mL39FA [auth 7]338Homo sapiensMutation(s): 0 
Gene Names: MRPL39, C21orf92, MRPL5, RPML5, MSTP003, PRED22
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NYK5 (Homo sapiens)
Explore Q9NYK5 
Go to UniProtKB:  Q9NYK5
PHAROS:  Q9NYK5
GTEx:  ENSG00000154719 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NYK5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
mL40GA [auth 8]206Homo sapiensMutation(s): 0 
Gene Names: MRPL40, NLVCF, URIM
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQ50 (Homo sapiens)
Explore Q9NQ50 
Go to UniProtKB:  Q9NQ50
PHAROS:  Q9NQ50
GTEx:  ENSG00000185608 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NQ50
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
mL41HA [auth 9]137Homo sapiensMutation(s): 0 
Gene Names: MRPL41, BMRP, MRPL27, RPML27, PIG3
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IXM3 (Homo sapiens)
Explore Q8IXM3 
Go to UniProtKB:  Q8IXM3
PHAROS:  Q8IXM3
GTEx:  ENSG00000182154 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IXM3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetailsImage
mL42IA [auth a]142Homo sapiensMutation(s): 0 
Gene Names: MRPL42, MRPL31, MRPS32, RPML31, HSPC204, PTD007
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6G3 (Homo sapiens)
Explore Q9Y6G3 
Go to UniProtKB:  Q9Y6G3
PHAROS:  Q9Y6G3
GTEx:  ENSG00000198015 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y6G3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetailsImage
mL43JA [auth b]155Homo sapiensMutation(s): 0 
Gene Names: MRPL43
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N983 (Homo sapiens)
Explore Q8N983 
Go to UniProtKB:  Q8N983
PHAROS:  Q8N983
GTEx:  ENSG00000055950 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N983
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetailsImage
mL44KA [auth c]332Homo sapiensMutation(s): 0 
Gene Names: MRPL44
EC: 3.1.26
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H9J2 (Homo sapiens)
Explore Q9H9J2 
Go to UniProtKB:  Q9H9J2
PHAROS:  Q9H9J2
GTEx:  ENSG00000135900 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H9J2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetailsImage
mL45LA [auth d]306Homo sapiensMutation(s): 0 
Gene Names: MRPL45
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRJ2 (Homo sapiens)
Explore Q9BRJ2 
Go to UniProtKB:  Q9BRJ2
PHAROS:  Q9BRJ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BRJ2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetailsImage
mL46MA [auth e]279Homo sapiensMutation(s): 0 
Gene Names: MRPL46, C15orf4, LIECG2
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2W6 (Homo sapiens)
Explore Q9H2W6 
Go to UniProtKB:  Q9H2W6
GTEx:  ENSG00000259494 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H2W6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetailsImage
mL48NA [auth f]211Homo sapiensMutation(s): 0 
Gene Names: MRPL48, CGI-118, HSPC290
UniProt & NIH Common Fund Data Resources
Find proteins for Q96GC5 (Homo sapiens)
Explore Q96GC5 
Go to UniProtKB:  Q96GC5
PHAROS:  Q96GC5
GTEx:  ENSG00000175581 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96GC5
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetailsImage
mL49OA [auth g]166Homo sapiensMutation(s): 0 
Gene Names: MRPL49, C11orf4, NOF1, OK/SW-cl.67
UniProt & NIH Common Fund Data Resources
Find proteins for Q13405 (Homo sapiens)
Explore Q13405 
Go to UniProtKB:  Q13405
PHAROS:  Q13405
GTEx:  ENSG00000149792 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13405
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetailsImage
mL50PA [auth h]158Homo sapiensMutation(s): 0 
Gene Names: MRPL50
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N5N7 (Homo sapiens)
Explore Q8N5N7 
Go to UniProtKB:  Q8N5N7
PHAROS:  Q8N5N7
GTEx:  ENSG00000136897 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N5N7
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetailsImage
mL51QA [auth i]128Homo sapiensMutation(s): 0 
Gene Names: MRPL51, MRP64, CDA09, HSPC241
UniProt & NIH Common Fund Data Resources
Find proteins for Q4U2R6 (Homo sapiens)
Explore Q4U2R6 
Go to UniProtKB:  Q4U2R6
PHAROS:  Q4U2R6
GTEx:  ENSG00000111639 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ4U2R6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetailsImage
mL52RA [auth j]123Homo sapiensMutation(s): 0 
Gene Names: MRPL52
UniProt & NIH Common Fund Data Resources
Find proteins for Q86TS9 (Homo sapiens)
Explore Q86TS9 
Go to UniProtKB:  Q86TS9
PHAROS:  Q86TS9
GTEx:  ENSG00000172590 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86TS9
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetailsImage
mL53SA [auth k]112Homo sapiensMutation(s): 0 
Gene Names: MRPL53
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EL3 (Homo sapiens)
Explore Q96EL3 
Go to UniProtKB:  Q96EL3
GTEx:  ENSG00000204822 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96EL3
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetailsImage
mL63TA [auth o]102Homo sapiensMutation(s): 0 
Gene Names: MRPL57, MRP63
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQC6 (Homo sapiens)
Explore Q9BQC6 
Go to UniProtKB:  Q9BQC6
PHAROS:  Q9BQC6
GTEx:  ENSG00000173141 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BQC6
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetailsImage
ICT1UA [auth p]206Homo sapiensMutation(s): 0 
Gene Names: MRPL58, DS1, ICT1
EC: 3.1.1.29
UniProt & NIH Common Fund Data Resources
Find proteins for Q14197 (Homo sapiens)
Explore Q14197 
Go to UniProtKB:  Q14197
PHAROS:  Q14197
GTEx:  ENSG00000167862 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14197
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetailsImage
CRIF1VA [auth q]222Homo sapiensMutation(s): 0 
Gene Names: GADD45GIP1, MRPL59, PLINP1, PRG6
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TAE8 (Homo sapiens)
Explore Q8TAE8 
Go to UniProtKB:  Q8TAE8
PHAROS:  Q8TAE8
GTEx:  ENSG00000179271 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TAE8
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetailsImage
bS18aWA [auth r]196Homo sapiensMutation(s): 0 
Gene Names: MRPS18A
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NVS2 (Homo sapiens)
Explore Q9NVS2 
Go to UniProtKB:  Q9NVS2
PHAROS:  Q9NVS2
GTEx:  ENSG00000096080 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NVS2
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetailsImage
mS30XA [auth s]439Homo sapiensMutation(s): 0 
Gene Names: MRPS30, PDCD9, BM-047
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NP92 (Homo sapiens)
Explore Q9NP92 
Go to UniProtKB:  Q9NP92
PHAROS:  Q9NP92
GTEx:  ENSG00000112996 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NP92
Protein Feature View
Expand
  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetailsImage
unknown proteinYA [auth t]127Homo sapiensMutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsLengthOrganismImage
16S rRNAA 1559Homo sapiens
Protein Feature View
Expand
  • Reference Sequence
Find similar nucleic acids by: 
(by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChainsLengthOrganismImage
mt-tRNAValB 73Homo sapiens
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A
Query on A
Download Ideal Coordinates CCD File 
ZA [auth A]ADENOSINE-5'-MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N		 Ligand Interaction
ZN
Query on ZN
Download Ideal Coordinates CCD File 
OD [auth 0],
PD [auth 4],
QD [auth r]		ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
MG
Query on MG
Download Ideal Coordinates CCD File 
AB [auth A],
AC [auth A],
AD [auth A],
BB [auth A],
BC [auth A],
AB [auth A],
AC [auth A],
AD [auth A],
BB [auth A],
BC [auth A],
BD [auth A],
CB [auth A],
CC [auth A],
CD [auth A],
DB [auth A],
DC [auth A],
DD [auth A],
EB [auth A],
EC [auth A],
ED [auth A],
FB [auth A],
FC [auth A],
FD [auth A],
GB [auth A],
GC [auth A],
GD [auth A],
HB [auth A],
HC [auth A],
HD [auth A],
IB [auth A],
IC [auth A],
ID [auth A],
JB [auth A],
JC [auth A],
JD [auth A],
KB [auth A],
KC [auth A],
KD [auth A],
LB [auth A],
LC [auth A],
LD [auth A],
MB [auth A],
MC [auth A],
MD [auth A],
NB [auth A],
NC [auth A],
ND [auth E],
OB [auth A],
OC [auth A],
PB [auth A],
PC [auth A],
QB [auth A],
QC [auth A],
RB [auth A],
RC [auth A],
SB [auth A],
SC [auth A],
TB [auth A],
TC [auth A],
UB [auth A],
UC [auth A],
VB [auth A],
VC [auth A],
WB [auth A],
WC [auth A],
XB [auth A],
XC [auth A],
YB [auth A],
YC [auth A],
ZB [auth A],
ZC [auth A]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-10-15
    Type: Initial release
  • Version 1.1: 2014-11-19
    Changes: Database references
  • Version 1.2: 2018-07-18
    Changes: Data collection