Biological Assembly 1  

 3D View: Structure

Global Symmetry: Helical - H  (3D View)
Global Stoichiometry: Homo 15-mer - A15 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 151.37 kDa 
• Atom Count: 10590 
• Residue Count: 1365 
• Unique protein chains: 1

3J63

Unified assembly mechanism of ASC-dependent inflammasomes

• DOI: 10.2210/pdb3J63/pdb
• EMDataResource: EMD-5830

• Classification: APOPTOSIS
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-12-05 Released: 2014-03-26 
• Deposition Author(s): Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: HELICAL ARRAY 
• Reconstruction Method: HELICAL 

Literature

Unified Polymerization Mechanism for the Assembly of ASC-Dependent Inflammasomes.

Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M.R., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.

(2014) Cell 156: 1193-1206

• PubMed: 24630722 
• DOI: 10.1016/j.cell.2014.02.008
• Structures With Same Primary Citation


• PubMed Abstract: 
  

Inflammasomes elicit host defense inside cells by activating caspase-1 for cytokine maturation and cell death. AIM2 and NLRP3 are representative sensor proteins in two major families of inflammasomes. The adaptor protein ASC bridges the sensor proteins and caspase-1 to form ternary inflammasome complexes, achieved through pyrin domain (PYD) interactions between sensors and ASC and through caspase activation and recruitment domain (CARD) interactions between ASC and caspase-1. We found that PYD and CARD both form filaments. Activated AIM2 and NLRP3 nucleate PYD filaments of ASC, which, in turn, cluster the CARD of ASC. ASC thus nucleates CARD filaments of caspase-1, leading to proximity-induced activation. Endogenous NLRP3 inflammasome is also filamentous. The cryoelectron microscopy structure of ASC(PYD) filament at near-atomic resolution provides a template for homo- and hetero-PYD/PYD associations, as confirmed by structure-guided mutagenesis. We propose that ASC-dependent inflammasomes in both families share a unified assembly mechanism that involves two successive steps of nucleation-induced polymerization. PAPERFLICK:

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Organizational Affiliation: 

Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Apoptosis-associated speck-like protein containing a CARD	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	91	Homo sapiens	Mutation(s): 0  Gene Names: PYCARD, ASC, CARD5, TMS1
Find proteins for Q9ULZ3 (Homo sapiens) Go to UniProtKB:  Q9ULZ3
NIH Common Fund Data Resources
PHAROS  Q9ULZ3 GTEx  ENSG00000103490

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.80 Å
• Aggregation State: HELICAL ARRAY 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2013-12-05 
• Released Date: 2014-03-26 
Deposition Author(s): Lu, A., Magupalli, V.G., Ruan, J., Yin, Q., Atianand, M.K., Vos, M., Schroder, G.F., Fitzgerald, K.A., Wu, H., Egelman, E.H.

Revision History 

• Version 1.0: 2014-03-26
  Type: Initial release
  
• Version 1.1: 2018-07-18
  Changes: Author supporting evidence, Data collection