3J42

Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 21.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.2 of the entry. See complete history


Literature

Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody.

Wang, Z.Li, L.Pennington, J.G.Sheng, J.Yap, M.L.Plevka, P.Meng, G.Sun, L.Jiang, W.Rossmann, M.G.

(2013) J Virol 87: 8909-8915

  • DOI: https://doi.org/10.1128/JVI.00472-13
  • Primary Citation of Related Structures:  
    3J42, 4KVC

  • PubMed Abstract: 

    The 2H2 monoclonal antibody recognizes the precursor peptide on immature dengue virus and might therefore be a useful tool for investigating the conformational change that occurs when the immature virus enters an acidic environment. During dengue virus maturation, spiky, immature, noninfectious virions change their structure to form smooth-surfaced particles in the slightly acidic environment of the trans-Golgi network, thereby allowing cellular furin to cleave the precursor-membrane proteins. The dengue virions become fully infectious when they release the cleaved precursor peptide upon reaching the neutral-pH environment of the extracellular space. Here we report on the cryo-electron microscopy structures of the immature virus complexed with the 2H2 antigen binding fragments (Fab) at different concentrations and under various pH conditions. At neutral pH and a high concentration of Fab molecules, three Fab molecules bind to three precursor-membrane proteins on each spike of the immature virus. However, at a low concentration of Fab molecules and pH 7.0, only two Fab molecules bind to each spike. Changing to a slightly acidic pH caused no detectable change of structure for the sample with a high Fab concentration but caused severe structural damage to the low-concentration sample. Therefore, the 2H2 Fab inhibits the maturation process of immature dengue virus when Fab molecules are present at a high concentration, because the three Fab molecules on each spike hold the precursor-membrane molecules together, thereby inhibiting the normal conformational change that occurs during maturation.


  • Organizational Affiliation

    Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Envelope protein E
A, B, C
390dengue virus type 2Mutation(s): 0 
UniProt
Find proteins for O11875 (dengue virus type 2)
Explore O11875 
Go to UniProtKB:  O11875
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO11875
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
PrM
D, E, F
81dengue virus type 2Mutation(s): 0 
UniProt
Find proteins for Q3BCY5 (dengue virus type 2)
Explore Q3BCY5 
Go to UniProtKB:  Q3BCY5
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UniProt GroupQ3BCY5
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ig heavy chain V region MOPC 21, Igh protein chimera
G, I, K
221Mus musculusMutation(s): 0 
Gene Names: Igh-1aIgh
UniProt
Find proteins for Q6PIP8 (Mus musculus)
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Go to UniProtKB:  Q6PIP8
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UniProt GroupQ6PIP8
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera
H, J, L
212Mus musculusMutation(s): 0 
Gene Names: Gm16939
UniProt
Find proteins for Q7TS98 (Mus musculus)
Explore Q7TS98 
Go to UniProtKB:  Q7TS98
Find proteins for P01634 (Mus musculus)
Explore P01634 
Go to UniProtKB:  P01634
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UniProt GroupsQ7TS98P01634
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 21.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONEMAN1
RECONSTRUCTIONEMAN2
RECONSTRUCTIONjspr

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-17
    Type: Initial release
  • Version 1.1: 2013-08-14
    Changes: Database references
  • Version 1.2: 2018-07-18
    Changes: Data collection