3J27
CryoEM structure of Dengue virus
- PDB DOI: https://doi.org/10.2210/pdb3J27/pdb
- EM Map EMD-5520: EMDB EMDataResource
- Classification: VIRUS
- Organism(s): dengue virus type 2
- Mutation(s): No 
- Deposited: 2012-09-26 Released: 2012-12-19 
Experimental Data Snapshot
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
wwPDB Validation   3D Report Full Report
This is version 2.0 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Envelope protein E | 495 | dengue virus type 2 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P14340 (Dengue virus type 2 (strain Thailand/NGS-C/1944)) Explore P14340  Go to UniProtKB:  P14340 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14340 | ||||
Sequence AnnotationsExpand | |||||
|
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small envelope protein M | 75 | dengue virus type 2 | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for P14340 (Dengue virus type 2 (strain Thailand/NGS-C/1944)) Explore P14340  Go to UniProtKB:  P14340 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14340 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | J [auth A], K [auth C], L [auth E] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: ELECTRON MICROSCOPY
- Resolution: 3.60 Å
- Aggregation State: PARTICLE 
- Reconstruction Method: SINGLE PARTICLE 
Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | EMAN |
Entry History 
Deposition Data
- Released Date: 2012-12-19  Deposition Author(s): Zhang, X., Ge, P., Yu, X., Brannan, J.M., Bi, G., Zhang, Q., Schein, S., Zhou, Z.H.
Revision History (Full details and data files)
- Version 1.0: 2012-12-19
Type: Initial release - Version 1.1: 2012-12-26
Changes: Database references - Version 1.2: 2013-01-16
Changes: Database references - Version 1.3: 2018-07-18
Changes: Data collection - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary