3IXP

Crystal structure of the ecdysone receptor bound to BYI08346


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Adaptability of the ecdysone receptor bound to synthetic ligands

Moras, D.Billas, I.M.L.Browning, C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gene regulation protein
A
263Heliothis virescensMutation(s): 0 
Find proteins for Q7SIF6 (Heliothis virescens)
Go to UniProtKB:  Q7SIF6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ecdysone receptor
D
265Helicoverpa armigeraMutation(s): 4 
Find proteins for B9UCQ4 (Helicoverpa armigera)
Go to UniProtKB:  B9UCQ4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPH
Query on EPH

Download SDF File 
Download CCD File 
A
L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
C39 H68 N O8 P
MABRTXOVHMDVAT-AAEGOEIASA-N
 Ligand Interaction
834
Query on 834

Download SDF File 
Download CCD File 
D
N-[2-(2-chlorophenyl)-4-methyl-5-(1-methylethyl)-1H-imidazol-1-yl]-5-methyl-2,3-dihydro-1,4-benzodioxine-6-carboxamide
N-(2-(2-chlorophenyl)-5-isopropyl-4-methyl-1H-imidazol-1-yl)-5-methyl-2,3-dihyrobenzo[b][1,4]dioxine-6-carboxamide
C23 H24 Cl N3 O3
XLNQTHXOKGRTAL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.221 
  • Space Group: P 3 2 1
Unit Cell:
Length (Å)Angle (°)
a = 147.875α = 90.00
b = 147.875β = 90.00
c = 59.776γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
AMoREphasing
DENZOdata reduction
PDB_EXTRACTdata extraction
CNSrefinement
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2010-12-15
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description