3IX6

Crystal structure of Thymidylate synthase thyA from Brucella melitensis

PDB DOI: https://doi.org/10.2210/pdb3IX6/pdb

Classification: TRANSFERASE
Organism(s): Brucella melitensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-09-03 Released: 2009-09-22
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.245
R-Value Work: 0.213
R-Value Observed: 0.215

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Thymidylate synthase thyA from Brucella melitensis

Abendroth, J., Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecule Content

Total Structure Weight: 82.94 kDa
Atom Count: 4,124
Modelled Residue Count: 492
Deposited Residue Count: 720
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thymidylate synthase	A, B	360	Brucella melitensis	Mutation(s): 0 Gene Names: thyA, BMEI0608 EC: 2.1.1.45
UniProt
Find proteins for P67042 (Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)) Explore P67042 Go to UniProtKB: P67042
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P67042
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.245
R-Value Work: 0.213
R-Value Observed: 0.215
Space Group: C 1 2 1
Diffraction Data: https://doi.org/10.18430/M33IX6

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 154.6	α = 90
b = 62.19	β = 108.88
c = 85.96	γ = 90

Software Package:

Software Name	Purpose
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2009-09-22

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2009-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.