Download MendeleyStructure 9
Zhuang, M., Calabrese, M.F., Liu, J., Waddell, M.B., Nourse, A., Hammel, M., Miller, D.J., Walden, H., Duda, D.M., Steven, S., Hoggard, T., Harper, J.W., White, K.P., Schulman, B.A.To be published.
3IVB
Structures of SPOP-Substrate Complexes: Insights into Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATH-MacroH2ASBCpep1
- PDB DOI: https://doi.org/10.2210/pdb3IVB/pdb
- Classification: protein binding, ligase
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-08-31 Released: 2009-10-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.247
- R-Value Work: 0.218
- R-Value Observed: 0.220
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Speckle-type POZ protein | A | 145 | Homo sapiens | Mutation(s): 0 Gene Names: SPOP |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O43791 (Homo sapiens) Explore O43791 Go to UniProtKB: O43791 | |||||
PHAROS: O43791 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O43791 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Core histone macro-H2A.1 | B [auth M] | 15 | N/A | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75367 (Homo sapiens) Explore O75367 Go to UniProtKB: O75367 | |||||
PHAROS: O75367 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O75367 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth A], E [auth A], F [auth A], G [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | H [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.247
- R-Value Work: 0.218
- R-Value Observed: 0.220
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.021 | α = 90 |
| b = 44.021 | β = 90 |
| c = 266.84 | γ = 120 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Released Date: 2009-10-20 Deposition Author(s): Schulman, B.A., Miller, D.J., Calabrese, M.F., Seyedin, S.
Revision History (Full details and data files)
- Version 1.0: 2009-10-20
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance
