3ISI

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide

Nguyen, T.T.Cummings, J.A.Tsai, C.-L.Barondeau, D.P.Raushel, F.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
renal dipeptidaseX400Streptomyces coelicolorMutation(s): 0 
Find proteins for Q93J45 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore Q93J45 
Go to UniProtKB:  Q93J45
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B88
Query on B88

Download CCD File 
X
(2S)-2-{[(S)-[(1R)-1-aminoethyl](hydroxy)phosphoryl]methyl}butanedioic acid
C7 H14 N O6 P
LWODXTSWCZWQHR-RFZPGFLSSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
X
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.69α = 90
b = 96.69β = 90
c = 104.6γ = 120
Software Package:
Software NamePurpose
Blu-Icedata collection
PHASESphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2009-08-25 
  • Released Date: 2010-08-04 
  • Deposition Author(s): Nguyen, T.T.

Revision History 

  • Version 1.0: 2010-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance