3ISI

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of Sco3058 with bound inhibitor L-Ala-L-Asp Phosphinodipeptide

Nguyen, T.T.Cummings, J.A.Tsai, C.-L.Barondeau, D.P.Raushel, F.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
renal dipeptidaseA [auth X]400Streptomyces coelicolorMutation(s): 0 
UniProt
Find proteins for Q93J45 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore Q93J45 
Go to UniProtKB:  Q93J45
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ93J45
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.69α = 90
b = 96.69β = 90
c = 104.6γ = 120
Software Package:
Software NamePurpose
Blu-Icedata collection
PHASESphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

  • Released Date: 2010-08-04 
  • Deposition Author(s): Nguyen, T.T.

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description