Covalent Ubiquitin-Usp5 Complex
Walker, J.R., Avvakumov, G.V., Xue, S., Butler-Cole, C., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin carboxyl-terminal hydrolase 5 | 854 | Homo sapiens | Mutation(s): 0  Gene Names: ISOT, USP5 EC: 3.1.2.15 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P45974 (Homo sapiens) Explore P45974  Go to UniProtKB:  P45974 | |||||
PHAROS:  P45974 GTEx:  ENSG00000111667  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P45974 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 75 | Homo sapiens | Mutation(s): 0  Gene Names: RPS27A, UBA52, UBA80, UBB, UBC, UBCEP1, UBCEP2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48  Go to UniProtKB:  P0CG48 | |||||
PHAROS:  P0CG48 GTEx:  ENSG00000150991  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG48 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | E [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
NEH Query on NEH | G [auth C], H [auth D] | ETHANAMINE C2 H7 N QUSNBJAOOMFDIB-UHFFFAOYSA-N | |||
CL Query on CL | I [auth D] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 68.295 | α = 90 |
b = 188.845 | β = 90 |
c = 207.86 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |