3IE1

Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.231 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA

Ishikawa, H.Nakagawa, N.Kuramitsu, S.Masui, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ribonuclease TTHA0252
A, B, C, D
431Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 1 
EC: 3.1.-.-
Find proteins for Q5SLP1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP1
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*UP*UP*UP*U)-3')E,F,G,H4N/A
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, C, D
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
FLC
Query on FLC

Download SDF File 
Download CCD File 
A
CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.291 
  • R-Value Work: 0.231 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 143.424α = 90.00
b = 148.165β = 109.61
c = 120.837γ = 90.00
Software Package:
Software NamePurpose
XFITdata reduction
HKL-2000data collection
HKL-2000data reduction
CNSrefinement
SCALEPACKdata scaling
DENZOdata reduction
HKL-2000data scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-08-04
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Type: Refinement description