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Download EndnoteStructure of Protein serine/threonine phosphatase from Saccharomyces cerevisiae with similarity to human phosphatase PP5
Singer, A.U., Xu, X., Chang, C., Cui, H., Edwards, A.M., Joachimiak, A., Savchenko, A., Yakunin, A.F.To be published.
3ICF
Structure of Protein serine/threonine phosphatase from Saccharomyces cerevisiae with similarity to human phosphatase PP5
- DOI: 10.2210/pdb3ICF/pdb
- Classification: HYDROLASE
- Organism(s): Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Expression System: Escherichia coli
- Deposited: 2009-07-17 Released: 2009-08-25
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.240
- R-Value Work: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Serine/threonine-protein phosphatase T | A, B | 335 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Mutation(s): 0 Gene Names: PPT1 EC: 3.1.3.16 |
Find proteins for P53043 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Go to Gene View: PPT1 Go to UniProtKB: P53043 | ||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | A, B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| NA Query on NA | A | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| FE Query on FE | A, B | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.3 Å
- R-Value Free: 0.240
- R-Value Work: 0.190
- Space Group: P 32
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 47.194 | α = 90.00 |
| b = 47.194 | β = 90.00 |
| c = 237.096 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| HKL-2000 | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-3000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2009-07-17
- Released Date: 2009-08-25
- Deposition Author(s): Singer, A.U., Xu, X., Chang, C., Cui, H., Kagan, O., Edwards, A.M., Joachimiak, A., Yakunin, A.F., Savchenko, A., Midwest Center for Structural Genomics (MCSG)
