3I8N

A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.145 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.219 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A domain of a conserved functionally known protein from Vibrio parahaemolyticus RIMD 2210633.

Tan, K.Tesar, C.Bearden, J.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
uncharacterized protein VP2912
A, B
130Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Mutation(s): 0 
Find proteins for Q87KR4 (Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633))
Go to UniProtKB:  Q87KR4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMT
Query on FMT

Download SDF File 
Download CCD File 
A, B
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.145 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.219 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 69.301α = 90.00
b = 69.301β = 90.00
c = 255.136γ = 120.00
Software Package:
Software NamePurpose
DMphasing
SHELXDphasing
MLPHAREphasing
WARPmodel building
SBC-Collectdata collection
ARPmodel building
HKL-3000data scaling
DMmodel building
HKL-3000phasing
PHENIXrefinement
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-09-01
    Type: Initial release
  • Version 1.1: 2011-07-13
    Type: Version format compliance